RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ADORA3P0DMS8 318 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 BMP4P12644 408 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 TNFRSF1BP20333 461 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 AHCYP23526 432 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 THBS4P35443 961 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 SNRPD2P62316 118 aaKnown RBP9.38□□□□□ -0.91
VPS39-208ENST00000564994 LOXL1Q08397 574 aaPredicted RBP9.38□□□□□ -0.91
VPS39-208ENST00000564994 NPRL3Q12980 569 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 KLF10Q13118 480 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 CYLC2Q14093 348 aaPredicted RBP9.38□□□□□ -0.91
VPS39-208ENST00000564994 EFNB3Q15768 340 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 TMEM249Q2WGJ8 235 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 REP15Q6BDI9 236 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 ZNF627Q7L945 461 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 ANKS4BQ8N8V4 417 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 NUP37Q8NFH4 326 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 FAM168AQ92567 244 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 MS4A3Q96HJ5 214 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 ZNF75AQ96N20 296 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 TNFRSF13CQ96RJ3 184 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 MDFIQ99750 246 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 PLK3Q9H4B4 646 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 MOV10Q9HCE1 1003 aaKnown RBP9.38□□□□□ -0.91
VPS39-208ENST00000564994 SAR1AQ9NR31 198 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 YAE1D1Q9NRH1 226 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 TAS2R5Q9NYW4 299 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 ZNF224Q9NZL3 707 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 TMEM129A0AVI4 362 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 ZNF726A6NNF4 738 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 VWC2LB2RUY7 222 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 B9A039 149 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 PDE5AO76074 875 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 IGFBP1P08833 259 aaPredicted RBP9.37□□□□□ -0.91
VPS39-208ENST00000564994 IFNGR1P15260 489 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 B4GALT1P15291 398 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 SLC25A16P16260 332 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 ARR3P36575 388 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 CAPZA2P47755 286 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 ARFIP2P53365 341 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 BIDP55957 195 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 PIGFQ07326 219 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 ZP4Q12836 540 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 COQ5Q5HYK3 327 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 C6orf52Q5T4I8 152 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 INTS11Q5TA45 600 aaKnown RBP9.37□□□□□ -0.91
VPS39-208ENST00000564994 TTC33Q6PID6 262 aaPredicted RBP9.37□□□□□ -0.91
VPS39-208ENST00000564994 ZNF813Q6ZN06 617 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 SLC46A3Q7Z3Q1 461 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 OR4F15Q8NGB8 312 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 OR8J3Q8NGG0 315 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 OR6N1Q8NGY5 312 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 SLC26A7Q8TE54 656 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 TMEM54Q969K7 222 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 ZNF583Q96ND8 569 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 VRK1Q99986 396 aaPredicted RBP9.37□□□□□ -0.91
VPS39-208ENST00000564994 ULBP2Q9BZM5 246 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 ZNF442Q9H7R0 627 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 MEPEQ9NQ76 525 aaPredicted RBP9.37□□□□□ -0.91
VPS39-208ENST00000564994 SH3GLB1Q9Y371 365 aa9.37□□□□□ -0.91
VPS39-208ENST00000564994 LOC100653049A0A140TA62 436 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 MRASO14807 208 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 SHOX2O60902 331 aaPredicted RBP9.36□□□□□ -0.91
VPS39-208ENST00000564994 KRT34O76011 436 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 OR6A2O95222 327 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 CSF3P09919 207 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 ASAH2BP0C7U1 165 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 TROVE2P10155 538 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS39-208ENST00000564994 CD79AP11912 226 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 ZNF14P17017 642 aaPredicted RBP9.36□□□□□ -0.91
VPS39-208ENST00000564994 CSNK1A1P48729 337 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 VLDLRP98155 873 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 MELKQ14680 651 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 MSMPQ1L6U9 139 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 GSG1Q2KHT4 349 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 MMEL1Q495T6 779 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 LRFN4Q6PJG9 635 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 SLC35D2Q76EJ3 337 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 CARM1Q86X55 608 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 SNX32Q86XE0 403 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 HIPK1Q86Z02 1210 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 NKAIN4Q8IVV8 208 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 CCDC36Q8IYA8 594 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 ZCCHC24Q8N2G6 241 aaKnown RBP9.36□□□□□ -0.91
VPS39-208ENST00000564994 OR6X1Q8NH79 312 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 FGFBP3Q8TAT2 258 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 C10orf82Q8WW14 230 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 PROX1Q92786 737 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 MPP4Q96JB8 637 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 DOK1Q99704 481 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 FOXB1Q99853 325 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 ECSITQ9BQ95 431 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 SLC19A3Q9BZV2 496 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 B3GAT2Q9NPZ5 323 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 NANSQ9NR45 359 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 ZNF229Q9UJW7 825 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 POFUT2Q9Y2G5 429 aa9.36□□□□□ -0.91
VPS39-208ENST00000564994 STAB1Q9NY15 2570 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 BBIP1A8MTZ0 92 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 A8MV72 311 aaPredicted RBP9.35□□□□□ -0.91
VPS39-208ENST00000564994 hCG_2039718K7EN88 272 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms