RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CR1LQ2VPA4 569 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 BEND6Q5SZJ8 279 aaPredicted RBP10.04□□□□□ -0.8
USP3-220ENST00000561381 FAM91A1Q658Y4 838 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 C5orf46Q6UWT4 87 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 NET1Q7Z628 596 aaPredicted RBP10.04□□□□□ -0.8
USP3-220ENST00000561381 KRT73Q86Y46 540 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 SMYD1Q8NB12 490 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 ADPRHL1Q8NDY3 354 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 SLC47A1Q96FL8 570 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 C7orf26Q96N11 449 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 ZNF75AQ96N20 296 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 ANKRD27Q96NW4 1050 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 C19orf24Q9BVV8 132 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 TPK1Q9H3S4 243 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 TMEM27Q9HBJ8 222 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 MOV10Q9HCE1 1003 aaKnown RBP10.04□□□□□ -0.8
USP3-220ENST00000561381 DYNLRB1Q9NP97 96 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 ZNF224Q9NZL3 707 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 TESQ9UGI8 421 aaKnown RBP10.04□□□□□ -0.8
USP3-220ENST00000561381 USP22Q9UPT9 525 aa10.04□□□□□ -0.8
USP3-220ENST00000561381 M0R3H8 397 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 PLPP3O14495 311 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 AKAP8O43823 692 aaKnown RBP10.03□□□□□ -0.8
USP3-220ENST00000561381 SERPINI2O75830 405 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 MFN2O95140 757 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 TACSTD2P09758 323 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 B4GALT1P15291 398 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 ZNF14P17017 642 aaPredicted RBP10.03□□□□□ -0.8
USP3-220ENST00000561381 GPX2P18283 190 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 NR4A1P22736 598 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 SLC6A2P23975 617 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 THBS2P35442 1172 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 NCALDP61601 193 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 PUDPQ08623 228 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 PMS2P3Q13401 168 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 MFSD13AQ14CX5 517 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 AGKQ53H12 422 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 ZNF813Q6ZN06 617 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 CCDC36Q8IYA8 594 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 ZNF786Q8N393 782 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 C10orf53Q8N6V4 93 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 ZNF540Q8NDQ6 660 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 OR6S1Q8NH40 331 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 UBASH3BQ8TF42 649 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 NEU4Q8WWR8 484 aaPredicted RBP10.03□□□□□ -0.8
USP3-220ENST00000561381 ITPKCQ96DU7 683 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 SNX18Q96RF0 628 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 CPPED1Q9BRF8 314 aaPredicted RBP10.03□□□□□ -0.8
USP3-220ENST00000561381 SPATA5L1Q9BVQ7 753 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 ASPNQ9BXN1 380 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 MRPL37Q9BZE1 423 aaKnown RBP10.03□□□□□ -0.8
USP3-220ENST00000561381 TMEM38AQ9H6F2 299 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 ZFAND3Q9H8U3 227 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 SELENONQ9NZV5 590 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.03□□□□□ -0.8
USP3-220ENST00000561381 CORINQ9Y5Q5 1042 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 GMEB1Q9Y692 573 aa10.03□□□□□ -0.8
USP3-220ENST00000561381 VSTM5A8MXK1 200 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 C11orf98E9PRG8 122 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 TGDSO95455 350 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 OPN1SWP03999 348 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 ERCC1P07992 297 aaPredicted RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 PATE4P0C8F1 98 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 ZNF35P13682 527 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 TCN1P20061 433 aaPredicted RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 PPIBP23284 216 aaKnown RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 AHCYP23526 432 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 APEX1P27695 318 aaKnown RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 PTDSS1P48651 473 aaKnown RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 CHN2P52757 468 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 RIN1Q13671 783 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 GSG1Q2KHT4 349 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 DLEU7Q6UYE1 221 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 WDR88Q6ZMY6 472 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 LRP11Q86VZ4 500 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 PTOV1Q86YD1 416 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 ARMC8Q8IUR7 673 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 SCAIQ8N9R8 606 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 IL17RDQ8NFM7 739 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 OR6N1Q8NGY5 312 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 FGFBP3Q8TAT2 258 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 MRPL24Q96A35 216 aaKnown RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 LRR1Q96L50 414 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 ZNF607Q96SK3 696 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 EPYCQ99645 322 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 MCHR1Q99705 422 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 FOXB1Q99853 325 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 SYT3Q9BQG1 590 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 CCDC28BQ9BUN5 200 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 ULBP2Q9BZM5 246 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 MRPL39Q9NYK5 338 aaKnown RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 MYEF2Q9P2K5 600 aaKnown RBP10.02□□□□□ -0.81
USP3-220ENST00000561381 FZR1Q9UM11 496 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 POFUT2Q9Y2G5 429 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 CMAHPQ9Y471 501 aa10.02□□□□□ -0.81
USP3-220ENST00000561381 PRORSD1PA6NEY8 169 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 ZNF726A6NNF4 738 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 SERPINB7O75635 380 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 THY1P04216 161 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 IFNGR1P15260 489 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms