RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 UGT2B10P36537 528 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 HPCAL1P37235 193 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 TALDO1P37837 337 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 DDOSTP39656 456 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 MAGEA4P43358 317 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 PSMD8P48556 350 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ETV1P50549 477 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 KIAA1024LP59773 190 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 OTUD4Q01804 1114 aaKnown RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 GBE1Q04446 702 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 BST2Q10589 180 aaKnown RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 SMARCB1Q12824 385 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 NPRL3Q12980 569 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 PPIL2Q13356 520 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 DPYSL3Q14195 570 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 EIF2B1Q14232 305 aaKnown RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 TMED2Q15363 201 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 PKN2Q16513 984 aaKnown RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 LY6EQ16553 131 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF181Q2M3W8 571 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 IFI44LQ53G44 452 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 YIF1BQ5BJH7 314 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 RABGAP1LQ5R372 815 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 XKRXQ6PP77 449 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 IGFL1Q6UW32 110 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 KCTD9Q7L273 389 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ARCQ7LC44 396 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 CDR2LQ86X02 465 aaPredicted RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 TBC1D21Q8IYX1 336 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 SAXO1Q8IYX7 474 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ANKFN1Q8N957 763 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ENKURQ8TC29 256 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 CNBD2Q96M20 576 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 OPALINQ96PE5 141 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 CYTH2Q99418 400 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ATP6V0BQ99437 205 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 SORT1Q99523 831 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 SPXQ9BT56 116 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 KIFC1Q9BW19 673 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF350Q9GZX5 532 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 TRPV6Q9H1D0 765 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 OR51B5Q9H339 312 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 LIN28AQ9H9Z2 209 aaKnown RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 FBXO6Q9NRD1 293 aaPredicted RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ELOVL2Q9NXB9 296 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 CD274Q9NZQ7 290 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ENPP5Q9UJA9 477 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 AP3M1Q9Y2T2 418 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 RBMX2Q9Y388 322 aaKnown RBP2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ALG6Q9Y672 507 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 TIAM2Q8IVF5 1701 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 NALCNQ8IZF0 1738 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 ATAD5Q96QE3 1844 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 KIF13AQ9H1H9 1805 aa2.33□□□□□ -2.04
VPS13C-208ENST00000559119 MYH2Q9UKX2 1941 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PEAK1Q9H792 1746 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 A0A1B0GUL6 1792 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 KDM3BQ7LBC6 1761 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 IGLV4-69A0A075B6H9 119 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 C1orf232A0A0U1RR37 186 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 RNF103-CHMP3A0A140T963 221 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 GOLGA8IPA6NC78 632 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 SMCO2A6NFE2 343 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ARHGAP42A6NI28 874 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TRPC5OSA6NMA1 111 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 GOLGA8JA6NMD2 632 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 F5H6K3 240 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TMX2-CTNND1H3BSU7 103 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 H7C0C1 242 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 I3L4J1 428 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 J3QRK9 145 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 CACNB4O00305 520 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 DNALI1O14645 258 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 IMPA2O14732 288 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NMT2O60551 498 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 SNX4O95219 450 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PTTG1O95997 202 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PAHP00439 452 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 IFNA16P05015 189 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PCCAP05165 728 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 RALBP11234 206 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 GZMAP12544 262 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 GAP43P17677 238 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 MAGP20916 626 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 HTR1EP28566 365 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 SERPINB1P30740 379 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 HSPA1LP34931 641 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 BTDP43251 543 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 GNPDA1P46926 289 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 HAAOP46952 286 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 HCAR3P49019 387 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NUMBP49757 651 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NME5P56597 212 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 MAP3K7CLP57077 242 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NLRP11P59045 1033 aaKnown RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 SSTP61278 116 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 POLR2GP62487 172 aaKnown RBP eCLIP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 GALK2Q01415 458 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 KDSRQ06136 332 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 EGFEM1PQ0D2K5 195 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms