RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 OR2T27Q8NH04 317 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 ATOH1Q92858 354 aaPredicted RBP10.36□□□□□ -0.75
LDLR-208ENST00000558518 TSACCQ96A04 125 aaPredicted RBP10.36□□□□□ -0.75
LDLR-208ENST00000558518 GIMAP5Q96F15 307 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 C19orf43Q9BQ61 176 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 PBX4Q9BYU1 374 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 SLC22A13Q9Y226 551 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 KLHDC2Q9Y2U9 406 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 AUP1Q9Y679 476 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 A0A0A6YYC8 382 aaPredicted RBP10.36□□□□□ -0.75
LDLR-208ENST00000558518 ANKRD20A5PA0PJZ0 165 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 I3L1I5 382 aaPredicted RBP10.36□□□□□ -0.75
LDLR-208ENST00000558518 J3QRE1 110 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 OR6A2O95222 327 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 SPI1P17947 270 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 FAM53BQ14153 422 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 CDNFQ49AH0 187 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 GALNTL5Q7Z4T8 443 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 SPRED2Q7Z698 418 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 PATE1Q8WXA2 126 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 WDR13Q9H1Z4 485 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 FAM96BQ9Y3D0 163 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 C1QTNF3-AMACRE9PGA6 284 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 P2RX6O15547 441 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 KLF4O43474 513 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 GALR3O60755 368 aaPredicted RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 TYRP1P17643 537 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ADRA2CP18825 462 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 DPP4P27487 766 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 CD34P28906 385 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 EIF1AXP47813 144 aaKnown RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 SPOCK1Q08629 439 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 IRF4Q15306 451 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 HNRNPA1L2Q32P51 320 aaKnown RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 C3orf33Q6P1S2 294 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 KIRREL2Q6UWL6 708 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 SLC16A13Q7RTY0 426 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 OR5M9Q8NGP3 310 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 NANPQ8TBE9 248 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 MOAP1Q96BY2 351 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 PHPT1Q9NRX4 125 aaPredicted RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 KIAA1671Q9BY89 1806 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TRAV1-2A0A0B4J238 106 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 H0Y8X5 98 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 DNASE2O00115 360 aaPredicted RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 EML2O95834 649 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 MAP3K8P41279 467 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 HTRA4P83105 476 aaPredicted RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 MAT1AQ00266 395 aaKnown RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 KLHL26Q53HC5 615 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 EXOSC6Q5RKV6 272 aaKnown RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 STEAP1BQ6NZ63 245 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ENPP7Q6UWV6 458 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TMEM17Q86X19 198 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TMEM52Q8NDY8 209 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ZNF681Q96N22 645 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ZNF350Q9GZX5 532 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 RNF208Q9H0X6 261 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 EPHX3Q9H6B9 360 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ADAM29Q9UKF5 820 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 PCDHB10Q9UN67 800 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ZNF337Q9Y3M9 751 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ZNF175Q9Y473 711 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TDRD6O60522 2096 aaKnown RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 NOTCH4Q99466 2003 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TMEM82A0PJX8 343 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 NAP1L6A6NFF2 107 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 OR5H14A6NHG9 310 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 HRKO00198 91 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ALOX12BO75342 701 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 LDOC1O95751 146 aaPredicted RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 CSTAP01040 98 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 LAG3P18627 525 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 NFYBP25208 207 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 EEF1A1P68104 462 aaKnown RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 GLT8D1Q68CQ7 371 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 LHX8Q68G74 356 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TFAP2EQ6VUC0 442 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 OVCH1Q7RTY7 1134 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TMEM200AQ86VY9 491 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 SFTPA2Q8IWL1 248 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 FAM71CQ8NEG0 241 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TMED6Q8WW62 240 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 COMMD4Q9H0A8 199 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 WDR76Q9H967 626 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 CERS4Q9HA82 394 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 INPP5EQ9NRR6 644 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 ZNF223Q9UK11 482 aaPredicted RBP10.35□□□□□ -0.75
LDLR-208ENST00000558518 CES1P1Q9UKY3 287 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 PRELID3BQ9Y3B1 194 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 TRIOO75962 3097 aa10.35□□□□□ -0.75
LDLR-208ENST00000558518 BET1O15155 118 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 SLC25A12O75746 678 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 SPARCP09486 303 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PI3P19957 117 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ATP1B3P54709 279 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ARHGAP19Q14CB8 494 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 MANEAQ5SRI9 462 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 SHEQ5VZ18 495 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PRSS58Q8IYP2 241 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms