RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 GMFGO60234 142 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 KHDRBS3O75525 346 aaKnown RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 PDE5AO76074 875 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 SLC35G4P0C7Q5 338 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 CCNCP24863 283 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 PEBP1P30086 187 aaKnown RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 STX17P56962 302 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 HERV-K104P61576 105 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 PDZK1IP1Q13113 114 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 TSTA3Q13630 321 aaPredicted RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 ZKSCAN8Q15776 578 aaPredicted RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 PTPN20Q4JDL3 420 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 HSP90AA4PQ58FG1 418 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 KLHL10Q6JEL2 608 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 TMEM220Q6QAJ8 160 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 KLHDC8AQ8IYD2 350 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 PYROXD2Q8N2H3 581 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 ZCCHC7Q8N3Z6 543 aaKnown RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 CCDC185Q8N715 623 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 NEIL3Q8TAT5 605 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 UBLCP1Q8WVY7 318 aaPredicted RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 GIMAP1Q8WWP7 306 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 DYRK2Q92630 601 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 RBM41Q96IZ5 413 aaKnown RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 GSDMAQ96QA5 445 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 CITED1Q99966 193 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 SELENOSQ9BQE4 189 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 C11orf70Q9BRQ4 267 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 TUBGCP2Q9BSJ2 902 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 CDC42EP4Q9H3Q1 356 aaKnown RBP4.74□□□□□ -1.65
RTF1-204ENST00000558117 GORASP2Q9H8Y8 452 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 CALHM2Q9HA72 323 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 PALMDQ9NP74 551 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 ACP6Q9NPH0 428 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 UBQLN2Q9UHD9 624 aa4.74□□□□□ -1.65
RTF1-204ENST00000558117 SNRNP200O75643 2136 aaKnown RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 A0A087WZY1 265 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 A0A0B4J203 849 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 NDUFAF8A1L188 74 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 MGAT4DA6NG13 374 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 H0YIG0 161 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 MED7O43513 233 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 CYTIPO60759 359 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 TNFSF13O75888 250 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 RCBTB2O95199 551 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 SMC2O95347 1197 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 ACSL3O95573 720 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 MDKP21741 143 aaPredicted RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 HSPA9P38646 679 aaKnown RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 MAGEB1P43366 347 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 MTIF2P46199 727 aaKnown RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 SLCO1A2P46721 670 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 ATP5OP48047 213 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 SLC6A12P48065 614 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 DIO3P55073 304 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 MAXP61244 160 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 GALK2Q01415 458 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 IL10RBQ08334 325 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 IL24Q13007 206 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 STX1AQ16623 288 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 SFT2D3Q587I9 215 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 LCE1FQ5T754 118 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 FIP1L1Q6UN15 594 aaKnown RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 MMD2Q8IY49 270 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 RAB42Q8N4Z0 105 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 ZNF75CPQ92670 426 aaPredicted RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 TAF15Q92804 592 aaKnown RBP eCLIP4.73□□□□□ -1.65
RTF1-204ENST00000558117 CDKN2AIPNLQ96HQ2 116 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 VPS35Q96QK1 796 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 TBX15Q96SF7 602 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 TBCDQ9BTW9 1192 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 TPPP3Q9BW30 176 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 SUCNR1Q9BXA5 334 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 POLR1EQ9GZS1 481 aaKnown RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 TSPYL1Q9H0U9 437 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 UGT1A8Q9HAW9 530 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 MAGEF1Q9HAY2 307 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 ZNHIT6Q9NWK9 470 aaKnown RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 TRAF3IP3Q9Y228 551 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 WDR83OSQ9Y284 106 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 CAB39Q9Y376 341 aaPredicted RBP4.73□□□□□ -1.65
RTF1-204ENST00000558117 TMED5Q9Y3A6 229 aa4.73□□□□□ -1.65
RTF1-204ENST00000558117 OR2AG2A6NM03 316 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 MAGEB3O15480 346 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 STX10O60499 249 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 UGT1A9O60656 530 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 SRPX2O60687 465 aaPredicted RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 SCGB2A1O75556 95 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 CLDN9O95484 217 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 CSN3P07498 182 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 CSF3P09919 207 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 THRBP10828 461 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 CNR1P21554 472 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 IER3P46695 156 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 DLK1P80370 383 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 ATAD3BQ5T9A4 648 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 LRRC38Q5VT99 294 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 FRMPD2BQ6IN97 320 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 CES3Q6UWW8 571 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 DLEU7Q6UYE1 221 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms