RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 POLR2IP36954 125 aaKnown RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 FOXG1P55316 489 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 RPL27P61353 136 aaKnown RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 DBPQ10586 325 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 COX10Q12887 443 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 DPY19L2P2Q6ZN68 376 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF100Q8IYN0 542 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF808Q8N4W9 903 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 FAM26EQ8N5C1 309 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 IQCF1Q8N6M8 205 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 CLDN22Q8N7P3 220 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 OR4Q3Q8NH05 313 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 OR6X1Q8NH79 312 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF519Q8TB69 540 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 CA5BP1Q8WTZ4 195 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 ASB5Q8WWX0 329 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 HDAC2Q92769 488 aaKnown RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 APH1AQ96BI3 265 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 IFT27Q9BW83 186 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 POLDIP3Q9BY77 421 aaKnown RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 DCLRE1BQ9H816 532 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF556Q9HAH1 456 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 PAPOLBQ9NRJ5 636 aaKnown RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 KIF17Q9P2E2 1029 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 STX18Q9P2W9 335 aaKnown RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 RCE1Q9Y256 329 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 IER3IP1Q9Y5U9 82 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 TEX13CA0A0J9YWL9 993 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 NPIPB13A6NJU9 1138 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF726A6NNF4 738 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 NPIPB4C9JG80 1138 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 BHLHE40O14503 412 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 MSTNO14793 375 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 TRMUO75648 421 aaKnown RBP11.32□□□□□ -0.6
SHMT2-227ENST00000557269 ALPLP05186 524 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 PGA4P0DJD7 388 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 PGA3P0DJD8 388 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 OSMP13725 252 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 AGAP20933 346 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 POU1F1P28069 291 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 PEX2P28328 305 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 EPHA2P29317 976 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 SLC6A6P31641 620 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 ACVR1BP36896 505 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 DAG1Q14118 895 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 LRRC36Q1X8D7 754 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 MESTQ5EB52 335 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 TMEM236Q5W0B7 351 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 XKRXQ6PP77 449 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 C20orf196Q8IYI0 205 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 ARIH2OSQ8N7S6 290 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 MAGEE2Q8TD90 523 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-227ENST00000557269 RASD2Q96D21 266 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF837Q96EG3 531 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-227ENST00000557269 ERMAPQ96PL5 475 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-227ENST00000557269 TSSK6Q9BXA6 273 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 MRPL13Q9BYD1 178 aaKnown RBP11.32□□□□□ -0.6
SHMT2-227ENST00000557269 PIGMQ9H3S5 423 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 RNPEPL1Q9HAU8 725 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 KRT84Q9NSB2 600 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 TBC1D23Q9NUY8 699 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 PARPBPQ9NWS1 579 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 USE1Q9NZ43 259 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 POFUT2Q9Y2G5 429 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 INTS1Q8N201 2190 aaKnown RBP11.32□□□□□ -0.6
SHMT2-227ENST00000557269 PCNX1Q96RV3 2341 aa11.32□□□□□ -0.6
SHMT2-227ENST00000557269 H3BN98 237 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 H7C1C5 153 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 M0R3G1 203 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 SLC43A1O75387 559 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 CLDN14O95500 239 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 TXNDC12O95881 172 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 ACADSP16219 412 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 IGFBP5P24593 272 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 GRNP28799 593 aaKnown RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 DAP3P51398 398 aaKnown RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 LCN6P62502 163 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 TFF3Q07654 80 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 GINS1Q14691 196 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 TRIP10Q15642 601 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 TSC22D1Q15714 1073 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 SLC25A35Q3KQZ1 300 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF362Q5T0B9 420 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 SLC35F1Q5T1Q4 408 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 FBXW9Q5XUX1 488 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 ACSM5Q6NUN0 579 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 RPL13AP3Q6NVV1 102 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 ZBTB49Q6ZSB9 765 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 PTCHD4Q6ZW05 846 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 GABRG1Q8N1C3 465 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 PARP8Q8N3A8 854 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 SYT14Q8NB59 555 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 SSC4DQ8WTU2 575 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 NRG4Q8WWG1 115 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 TMEM54Q969K7 222 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 EME1Q96AY2 570 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 NMD3Q96D46 503 aaKnown RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 SLC25A44Q96H78 314 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 ADAD1Q96M93 576 aaKnown RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 RBM4BQ9BQ04 359 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms