RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 FGF14Q92915 247 aa1.8□□□□□ -2.12
SCFD1-216ENST00000555550 TSSK3Q96PN8 268 aa1.8□□□□□ -2.12
SCFD1-216ENST00000555550 MCCC2Q9HCC0 563 aa1.8□□□□□ -2.12
SCFD1-216ENST00000555550 ODF2LQ9ULJ1 636 aa1.8□□□□□ -2.12
SCFD1-216ENST00000555550 KIF3AQ9Y496 699 aa1.8□□□□□ -2.12
SCFD1-216ENST00000555550 KMOO15229 486 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 RAD51BO15315 384 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 DIRAS1O95057 198 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 DIRAS3O95661 229 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 GAPDHP04406 335 aaKnown RBP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 SLC2A5P22732 501 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 GNA11P29992 359 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 RORAP35398 523 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 SOX6P35712 828 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 RPL13AP40429 203 aaKnown RBP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 CX3CR1P49238 355 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 NCBP2P52298 156 aaKnown RBP eCLIP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 OR5I1Q13606 314 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 SELPLGQ14242 412 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 PRPSAP1Q14558 356 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 PYHIN1Q6K0P9 492 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 CNSTQ6PJW8 725 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 LINC00173Q6ZV60 143 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 LGI3Q8N145 548 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 ESR2Q92731 530 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 CXorf40BQ96DE9 158 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 OXGR1Q96P68 337 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 RSPH9Q9H1X1 276 aaPredicted RBP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 LINC00597Q9H2U6 94 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 WFDC1Q9HC57 220 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 FARSBQ9NSD9 589 aaKnown RBP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 EXD2Q9NVH0 621 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 ACTR3BQ9P1U1 418 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 LAMP5Q9UJQ1 280 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 PACSIN2Q9UNF0 486 aaPredicted RBP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 MEMO1Q9Y316 297 aa1.79□□□□□ -2.12
SCFD1-216ENST00000555550 COL5A1P20908 1838 aaPredicted RBP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 COL27A1Q8IZC6 1860 aaPredicted RBP1.79□□□□□ -2.12
SCFD1-216ENST00000555550 GABARAPO95166 117 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 EPB41P11171 864 aaKnown RBP1.78□□□□□ -2.12
SCFD1-216ENST00000555550 ATP6V1C1P21283 382 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 CA8P35219 290 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 NAMPTP43490 491 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 QARSP47897 775 aaKnown RBP1.78□□□□□ -2.12
SCFD1-216ENST00000555550 ESRRGP62508 458 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 PITPNAQ00169 270 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 IL1RL1Q01638 556 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 MEF2BQ02080 365 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-216ENST00000555550 C1orf61Q13536 156 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 GINS1Q14691 196 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 UBE2E3Q969T4 207 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 LRRC58Q96CX6 371 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 L3HYPDHQ96EM0 354 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 TGM7Q96PF1 710 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 CCT7Q99832 543 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 PLA2G12AQ9BZM1 189 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 HMG20AQ9NP66 347 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 GPATCH2LQ9NWQ4 482 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 BFARQ9NZS9 450 aa1.78□□□□□ -2.12
SCFD1-216ENST00000555550 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 YEATS2Q9ULM3 1422 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 ATP8B3O60423 1300 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 IGHV5-10-1A0A0J9YXX1 117 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 TMEM223A0PJW6 202 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 H0YHG0 523 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 SGK1O00141 431 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 TOM1O60784 492 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 IL4P05112 153 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 IGHV1-8P0DP01 117 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 NCF1P14598 390 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 TCN1P20061 433 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 LAP3P28838 519 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 CHI3L1P36222 383 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 CRYBB1P53674 252 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 SUB1P53999 127 aaKnown RBP eCLIP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 KRTAP12-3P60328 96 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 RPS21P63220 83 aaKnown RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 NCBP1Q09161 790 aaKnown RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 GANABQ14697 944 aaKnown RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 IRF4Q15306 451 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 DPYSL2Q16555 572 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 RAET1LQ5VY80 246 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 ECHDC2Q86YB7 292 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 ZDHHC21Q8IVQ6 265 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 OSR2Q8N2R0 312 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 TRMT10AQ8TBZ6 339 aaKnown RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 SGK3Q96BR1 496 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 TM4SF18Q96CE8 201 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 WFIKKN1Q96NZ8 548 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 ZNF382Q96SR6 550 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 CHAC1Q9BUX1 264 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 OSBPL10Q9BXB5 764 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 LY9Q9HBG7 655 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 CGNQ9P2M7 1197 aaKnown RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 KCNIP3Q9Y2W7 256 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 TIMM10BQ9Y5J6 103 aa1.77□□□□□ -2.13
SCFD1-216ENST00000555550 FCGBPQ9Y6R7 5405 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-216ENST00000555550 OR5B21A6NL26 309 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 HSD17B6O14756 317 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 FABP3P05413 133 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms