RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 LGALS3BPQ08380 585 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 NPTX1Q15818 432 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 VMACQ2NL98 169 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 MS4A18Q3C1V0 323 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 INTS11Q5TA45 600 aaKnown RBP10.25□□□□□ -0.77
SRP54-203ENST00000553544 C9orf135Q5VTT2 229 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 ZNF613Q6PF04 617 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 NHLRC1Q6VVB1 395 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 H1FNTQ75WM6 255 aaPredicted RBP10.25□□□□□ -0.77
SRP54-203ENST00000553544 CCDC80Q76M96 950 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 PATL1Q86TB9 770 aaKnown RBP10.25□□□□□ -0.77
SRP54-203ENST00000553544 RANBP3LQ86VV4 465 aaPredicted RBP10.25□□□□□ -0.77
SRP54-203ENST00000553544 ADPRHL1Q8NDY3 354 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 OR8J3Q8NGG0 315 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 OR4D11Q8NGI4 311 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 OR6T1Q8NGN1 323 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 ZNF417Q8TAU3 575 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 GCDHQ92947 438 aaPredicted RBP10.25□□□□□ -0.77
SRP54-203ENST00000553544 TAMM41Q96BW9 452 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 ZNF587Q96SQ5 575 aaPredicted RBP10.25□□□□□ -0.77
SRP54-203ENST00000553544 MCHR1Q99705 422 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 KCNS3Q9BQ31 491 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 TMEM43Q9BTV4 400 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 FBXO9Q9UK97 447 aaPredicted RBP10.25□□□□□ -0.77
SRP54-203ENST00000553544 SLC13A4Q9UKG4 626 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 RCE1Q9Y256 329 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 DYSFO75923 2080 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 TGP01266 2768 aa10.25□□□□□ -0.77
SRP54-203ENST00000553544 ARFGEF3Q5TH69 2177 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 PKD1L1Q8TDX9 2849 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 VSTM5A8MXK1 200 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 RPL36A-HNRNPH2H7BZ11 118 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 TRAF3IP2O43734 574 aaPredicted RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 UPK3AO75631 287 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 LYPD3O95274 346 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 THY1P04216 161 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 ERCC1P07992 297 aaPredicted RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 TACSTD2P09758 323 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 ZNF43P17038 809 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 APEX1P27695 318 aaKnown RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 GTF2E2P29084 291 aaKnown RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 IDH3GP51553 393 aaPredicted RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 ACTG1P63261 375 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 SF3A3Q12874 501 aaKnown RBP eCLIP10.24□□□□□ -0.77
SRP54-203ENST00000553544 SCGB2A2Q13296 93 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 MFSD13AQ14CX5 517 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 RABL3Q5HYI8 236 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 REP15Q6BDI9 236 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 NIPAL3Q6P499 406 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 KLHL24Q6TFL4 600 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 ABHD12BQ7Z5M8 362 aaPredicted RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 TSPYL5Q86VY4 417 aaPredicted RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 RBM45Q8IUH3 476 aaKnown RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 SCAIQ8N9R8 606 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 ANKK1Q8NFD2 765 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 OR1K1Q8NGR3 316 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 RP9Q8TA86 221 aaKnown RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 BCL2L2Q92843 193 aaPredicted RBP10.24□□□□□ -0.77
SRP54-203ENST00000553544 CMTM5Q96DZ9 223 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 MS4A3Q96HJ5 214 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 MOGAT1Q96PD6 335 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 EPYCQ99645 322 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 PCDHAC1Q9H158 963 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 OBP2BQ9NPH6 170 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 SELENONQ9NZV5 590 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 CORINQ9Y5Q5 1042 aa10.24□□□□□ -0.77
SRP54-203ENST00000553544 LOC100653049A0A140TA62 436 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 ZNF587BE7ETH6 402 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 MRASO14807 208 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 CHP2O43745 196 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 SNX3O60493 162 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 LILRA1O75019 489 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 DCTN3O75935 186 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 KRT34O76011 436 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 HPRP00739 348 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 CRYAAP02489 173 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 DAOP14920 347 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 CBLP22681 906 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 PAX7P23759 505 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 DVL1P1P54792 670 aaPredicted RBP10.23□□□□□ -0.77
SRP54-203ENST00000553544 CLDN17P56750 224 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 TBRG1Q3YBR2 411 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 HIKESHIQ53FT3 197 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 ENTPD8Q5MY95 495 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 WDR88Q6ZMY6 472 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 MAGEE2Q8TD90 523 aaPredicted RBP10.23□□□□□ -0.77
SRP54-203ENST00000553544 ADAMTS16Q8TE57 1224 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 NEU4Q8WWR8 484 aaPredicted RBP10.23□□□□□ -0.77
SRP54-203ENST00000553544 RASSF5Q8WWW0 418 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 ZNF583Q96ND8 569 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 ALKBH3Q96Q83 286 aaPredicted RBP10.23□□□□□ -0.77
SRP54-203ENST00000553544 ELAC2Q9BQ52 826 aaKnown RBP10.23□□□□□ -0.77
SRP54-203ENST00000553544 ZNF426Q9BUY5 554 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 FAM107BQ9H098 131 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 NELFAQ9H3P2 528 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 METTL17Q9H7H0 456 aaPredicted RBP10.23□□□□□ -0.77
SRP54-203ENST00000553544 CA10Q9NS85 328 aa10.23□□□□□ -0.77
SRP54-203ENST00000553544 MRPL39Q9NYK5 338 aaKnown RBP10.23□□□□□ -0.77
SRP54-203ENST00000553544 ARPC4-TTLL3A0A0A6YYG9 625 aa10.22□□□□□ -0.77
SRP54-203ENST00000553544 TMEM89A2RUT3 159 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms