RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NRIP3Q9NQ35 241 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 PLSCR4Q9NRQ2 329 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 TBC1D23Q9NUY8 699 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 PARPBPQ9NWS1 579 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 PRSS50Q9UI38 385 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 TMEFF2Q9UIK5 374 aaPredicted RBP18.76■□□□□ 0.59
VPS29-206ENST00000549578 ZNF346Q9UL40 294 aaKnown RBP18.76■□□□□ 0.59
VPS29-206ENST00000549578 POFUT2Q9Y2G5 429 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 HELZ2Q9BYK8 2649 aaKnown RBP18.75■□□□□ 0.59
VPS29-206ENST00000549578 H3BN98 237 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 AKAP8O43823 692 aaKnown RBP18.75■□□□□ 0.59
VPS29-206ENST00000549578 MGRN1O60291 552 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 IGHMP01871 453 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 CD8BP10966 210 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 OSMP13725 252 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 IGFBP5P24593 272 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 RUNX1T1Q06455 604 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 LGALS3BPQ08380 585 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 CAMK2DQ13557 499 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 DAG1Q14118 895 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 ARMC4Q5T2S8 1044 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 LPCAT4Q643R3 524 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 DPY19L2P2Q6ZN68 376 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 FAM122BQ7Z309 247 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 ZNF808Q8N4W9 903 aaPredicted RBP18.75■□□□□ 0.59
VPS29-206ENST00000549578 OR52L1Q8NGH7 329 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 LILRB4Q8NHJ6 448 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 MAGEE2Q8TD90 523 aaPredicted RBP18.75■□□□□ 0.59
VPS29-206ENST00000549578 DNAJC9Q8WXX5 260 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 RBM4BQ9BQ04 359 aaKnown RBP18.75■□□□□ 0.59
VPS29-206ENST00000549578 RBM4Q9BWF3 364 aaKnown RBP18.75■□□□□ 0.59
VPS29-206ENST00000549578 PIGMQ9H3S5 423 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 IER3IP1Q9Y5U9 82 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 TENM4Q6N022 2769 aa18.75■□□□□ 0.59
VPS29-206ENST00000549578 NPIPB13A6NJU9 1138 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 ZNF726A6NNF4 738 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 NPIPB4C9JG80 1138 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 POU1F1P28069 291 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 PEX2P28328 305 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 RPL27P61353 136 aaKnown RBP18.74■□□□□ 0.59
VPS29-206ENST00000549578 LRRC36Q1X8D7 754 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 ZBTB49Q6ZSB9 765 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 TMEM123Q8N131 208 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 OR6X1Q8NH79 312 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 RASD2Q96D21 266 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 Q96M85 177 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 SLC29A1Q99808 456 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 TSSK6Q9BXA6 273 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 TEX13CA0A0J9YWL9 993 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 NKX2-6A6NCS4 301 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 ALPLP05186 524 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 ACVR1BP36896 505 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 TSPO2Q5TGU0 170 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 XKRXQ6PP77 449 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 UBE2J2Q8N2K1 259 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 PARP8Q8N3A8 854 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 FAM26EQ8N5C1 309 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 ZNF519Q8TB69 540 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 TEX47Q8TBZ9 253 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 ADAD1Q96M93 576 aaKnown RBP18.74■□□□□ 0.59
VPS29-206ENST00000549578 ZNF570Q96NI8 536 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 ERMAPQ96PL5 475 aaPredicted RBP18.74■□□□□ 0.59
VPS29-206ENST00000549578 SLCO5A1Q9H2Y9 848 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 SLC7A10Q9NS82 523 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 USE1Q9NZ43 259 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 JKAMPQ9P055 326 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 GRHPRQ9UBQ7 328 aa18.74■□□□□ 0.59
VPS29-206ENST00000549578 WIPF3A6NGB9 483 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 MSTNO14793 375 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 SLC43A1O75387 559 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 UPK3AO75631 287 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 AGAP20933 346 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 ALDH3A2P51648 485 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 RPS6KA3P51812 740 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 SLC34A1Q06495 639 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 SLC25A35Q3KQZ1 300 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 ZNF474Q6S9Z5 364 aaPredicted RBP18.73■□□□□ 0.59
VPS29-206ENST00000549578 IQCF1Q8N6M8 205 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 OR4Q3Q8NH05 313 aa18.73■□□□□ 0.59
VPS29-206ENST00000549578 SLC25A44Q96H78 314 aaPredicted RBP18.73■□□□□ 0.59
VPS29-206ENST00000549578 CLEC18AA5D8T8 446 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 A8MXE2 369 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 BHLHE40O14503 412 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 SDHAP31040 664 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 RIPK1Q13546 671 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 MESTQ5EB52 335 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 PHYHD1Q5SRE7 291 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 CLEC18BQ6UXF7 455 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 ARIH2OSQ8N7S6 290 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 CLEC18CQ8NCF0 446 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 HDAC2Q92769 488 aaKnown RBP18.72■□□□□ 0.59
VPS29-206ENST00000549578 ZNF566Q969W8 418 aa18.72■□□□□ 0.59
VPS29-206ENST00000549578 ALKBH3Q96Q83 286 aaPredicted RBP18.72■□□□□ 0.59
VPS29-206ENST00000549578 SPTBN1Q01082 2364 aaKnown RBP18.71■□□□□ 0.59
VPS29-206ENST00000549578 H7C1C5 153 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 CASQ2O14958 399 aaPredicted RBP18.71■□□□□ 0.59
VPS29-206ENST00000549578 ARPC3O15145 178 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 TRMUO75648 421 aaKnown RBP18.71■□□□□ 0.59
VPS29-206ENST00000549578 CLDN14O95500 239 aa18.71■□□□□ 0.59
VPS29-206ENST00000549578 ATP6V1G2O95670 118 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms