RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TMEM14AQ9Y6G1 99 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 POM121BA6NF01 834 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 F5H5P2 479 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 CSF2RBP32927 897 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ADH7P40394 386 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 CLDN12P56749 244 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 SKP1P63208 163 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 GK2Q14410 553 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 FDX2Q6P4F2 183 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 DGAT2L6Q6ZPD8 337 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TMPRSS12Q86WS5 348 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TMEFF1Q8IYR6 380 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 OR2AK2Q8NG84 335 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 PCNPQ8WW12 178 aaKnown RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 ARSGQ96EG1 525 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 SHARPINQ9H0F6 387 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 TSPAN10Q9H1Z9 355 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-208ENST00000543633 FRRS1LQ9P0K9 344 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 EYSQ5T1H1 3165 aa12.5□□□□□ -0.41
VPS33A-208ENST00000543633 GOLGA4Q13439 2230 aaKnown RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 IGKV1D-42A0A075B6H8 117 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 GGT3PA6NGU5 568 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 OR4C45A6NMZ5 311 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 IDSB3KWA1 339 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 TRIM77I1YAP6 450 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 PYCARD-AS1I3L0S3 204 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 FGF2P09038 288 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 AKAIN1P0CW23 69 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 OR8G3PP0DMU2 310 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 VSIG10L2P0DP72 767 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 RPA2P15927 270 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ITPKBP27987 946 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 CDKN2AP42771 156 aaKnown RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 MAP2K6P52564 334 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 CCINQ13939 588 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 UBXN2BQ14CS0 331 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 PCGF3Q3KNV8 242 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ITPRIPL2Q3MIP1 535 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 PXDC1Q5TGL8 231 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 WBP2NLQ6ICG8 309 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 FAM122CQ6P4D5 195 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 NPSR1Q6W5P4 371 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 TDHQ8IZJ6 230 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 OR4C16Q8NGL9 310 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 GPR148Q8TDV2 347 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 EDAQ92838 391 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ORAI1Q96D31 301 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 CDCA3Q99618 268 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 AIFM2Q9BRQ8 373 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 EXOSC3Q9NQT5 275 aaKnown RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 MRPS33Q9Y291 106 aaKnown RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 FANCMQ8IYD8 2048 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 EML5Q05BV3 1969 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 CACNA1IQ9P0X4 2223 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 MYO9BQ13459 2157 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 A0A1B0GVT2 93 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ELOA3DA6NLF2 546 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 SULT1C2O00338 296 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 SDHBP21912 280 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 NTSR1P30989 418 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 MAT1AQ00266 395 aaKnown RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 CSRP2Q16527 193 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ZNF74Q16587 644 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ELOA3BQ3SY89 546 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 TMEM81Q6P7N7 255 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 TMEM184AQ6ZMB5 413 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 CDH26Q8IXH8 852 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ARHGEF39Q8N4T4 335 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 LSM14AQ8ND56 463 aaKnown RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 RCBTB1Q8NDN9 531 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ELOA3Q8NG57 546 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 RIT1Q92963 219 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 Q96M85 177 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 ADAD1Q96M93 576 aaKnown RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 CCDC3Q9BQI4 270 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 GINS4Q9BRT9 223 aa12.49□□□□□ -0.41
VPS33A-208ENST00000543633 MYOZ1Q9NP98 299 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-208ENST00000543633 SCN2AQ99250 2005 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 TMEM72A0PK05 275 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 GNB5O14775 395 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 RDH16O75452 317 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 WDPCPO95876 746 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 RNH1P13489 461 aaKnown RBP12.48□□□□□ -0.41
VPS33A-208ENST00000543633 LSSP48449 732 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 RPS15P62841 145 aaKnown RBP12.48□□□□□ -0.41
VPS33A-208ENST00000543633 STPG1Q5TH74 334 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 GSG1LQ6UXU4 331 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 ATG4DQ86TL0 474 aaPredicted RBP12.48□□□□□ -0.41
VPS33A-208ENST00000543633 LSRQ86X29 649 aaPredicted RBP12.48□□□□□ -0.41
VPS33A-208ENST00000543633 OR4N2Q8NGD1 307 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 OR2G2Q8NGZ5 317 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 CCL4L1Q8NHW4 92 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 CCDC107Q8WV48 283 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 LINC00052Q96N35 136 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 TTYH1Q9H313 450 aaPredicted RBP12.48□□□□□ -0.41
VPS33A-208ENST00000543633 C1orf198Q9H425 327 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 WDR76Q9H967 626 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 UPB1Q9UBR1 384 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 UNC80Q8N2C7 3258 aa12.48□□□□□ -0.41
VPS33A-208ENST00000543633 CDC40O60508 579 aaKnown RBP eCLIP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms