RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 FGFBP3Q8TAT2 258 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 SLC38A4Q969I6 547 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 SLC35B4Q969S0 331 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 VPS33AQ96AX1 596 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 SLC41A3Q96GZ6 507 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 TXNDC15Q96J42 360 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 ZNF747Q9BV97 191 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 TPT1P8Q9HAU6 139 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 C12orf10Q9HB07 376 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 SLC52A3Q9NQ40 469 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 PNPOQ9NVS9 261 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 MED29Q9NX70 200 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 KLHL14Q9P2G3 628 aa15.21■□□□□ 0.03
CLSTN3-214ENST00000542663 A0A0G2JMP0 313 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 A0A0X1KG70 313 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 A0A1W2PPW3 197 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 BIRC5O15392 142 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 RAB36O95755 333 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 CLPTM1O96005 669 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 FSHBP01225 129 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 PATE4P0C8F1 98 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 ANPEPP15144 967 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 HTR2AP28223 471 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 UBA52P62987 128 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 CCL8P80075 99 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 C5orf46Q6UWT4 87 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 COMTD1Q86VU5 262 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 LSMEM1Q8N8F7 131 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 OR4M2Q8NGB6 313 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 TSPAN32Q96QS1 320 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 FOXB1Q99853 325 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 DENND2DQ9H6A0 471 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 ARMC7Q9H6L4 198 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 SLC7A8Q9UHI5 535 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 ZNF346Q9UL40 294 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 POFUT2Q9Y2G5 429 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 IFT52Q9Y366 437 aa15.2■□□□□ 0.02
CLSTN3-214ENST00000542663 TRAV36DV7A0A075B6V5 113 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 A0A087WUJ7 227 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 A0A1B0GWA3 101 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 C17orf100A8MU93 164 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 NUDT7P0C024 238 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 CAMK2DQ13557 499 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 GLIPR1L2Q4G1C9 344 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 PDLIM3Q53GG5 364 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 NET1Q7Z628 596 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 SKA3Q8IX90 412 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 PAQR4Q8N4S7 273 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 RNF217Q8TC41 542 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 MGARPQ8TDB4 240 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 ROPN1BQ9BZX4 212 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 ROPN1Q9HAT0 212 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 B3GAT2Q9NPZ5 323 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 TAAR3PQ9P1P4 343 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 RPS6KB2Q9UBS0 482 aa15.19■□□□□ 0.02
CLSTN3-214ENST00000542663 CMYA5Q8N3K9 4069 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 IGLV3-9A0A075B6K5 115 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 J3QLI3 93 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 UBL3O95164 117 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 BCL10O95999 233 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 IGHV2-5P01817 119 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 BGLAPP02818 100 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 ZCCHC18P0CG32 403 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 HKR1P10072 659 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 NQO1P15559 274 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 BGNP21810 368 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 IFFO1Q0D2I5 559 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 NKPD1Q17RQ9 610 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 TUSC1Q2TAM9 212 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 RGS7BPQ6MZT1 257 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 BPIFB2Q8N4F0 458 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 NANPQ8TBE9 248 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 C22orf15Q8WYQ4 148 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 MAL2Q969L2 176 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 ULBP2Q9BZM5 246 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 BCL2L10Q9HD36 194 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 OPN4Q9UHM6 478 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 PPIAL4AQ9Y536 164 aa15.18■□□□□ 0.02
CLSTN3-214ENST00000542663 ZNF500O60304 480 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 SERPINA5P05154 406 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 IL6P05231 212 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 FAM157BP0CG42 384 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 ZNF250P15622 560 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 CRYBB2P43320 205 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 ERVS71-1P61550 626 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 ZP4Q12836 540 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 ALG10BQ5I7T1 473 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 DCAF12L2Q5VW00 463 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 SHISA2Q6UWI4 295 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 SCAIQ8N9R8 606 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 GLB1L3Q8NCI6 653 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 OR6N1Q8NGY5 312 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 GTF3AQ92664 365 aaKnown RBP15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 DVL3Q92997 716 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 RAB39BQ96DA2 213 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 MOGAT1Q96PD6 335 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 ZBTB18Q99592 522 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 WDR55Q9H6Y2 383 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 HINT3Q9NQE9 182 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms