RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 IDH3BO43837 385 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 FCGR2AP12318 317 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 HIST1H1CP16403 213 aaKnown RBP16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GNLYP22749 145 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 NTF4P34130 210 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 PTGER4P35408 488 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CLDN17P56750 224 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 RNPS1Q15287 305 aaKnown RBP16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SF3B4Q15427 424 aaKnown RBP eCLIP16.81■□□□□ 0.288e-7■■■□□ 18.2
TNFRSF1A-213ENST00000540022 MESTQ5EB52 335 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 C1orf185Q5T7R7 199 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ZNF691Q5VV52 312 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GPR139Q6DWJ6 353 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CASP12Q6UXS9 341 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SEM1Q6ZVN7 128 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ARIH2OSQ8N7S6 290 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 C9orf106Q8NAJ2 232 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 OR4K13Q8NH42 304 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ZNF519Q8TB69 540 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ASB10Q8WXI3 467 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 WNT2BQ93097 391 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TINAGQ9UJW2 476 aa16.81■□□□□ 0.28
TNFRSF1A-213ENST00000540022 HMGN1P05114 100 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ACVR1BP36896 505 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 DAP3P51398 398 aaKnown RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 BIDP55957 195 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CDC42P60953 191 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 EFNB1P98172 346 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 RUNX1T1Q06455 604 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 KRR1Q13601 381 aaKnown RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SNAPC1Q16533 368 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 MCEMP1Q8IX19 187 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TUSC5Q8IXB3 177 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 OR52E2Q8NGJ4 325 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SLC38A2Q96QD8 506 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TP63Q9H3D4 680 aaPredicted RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 BCO1Q9HAY6 547 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CMC2Q9NRP2 79 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 USP9YO00507 2555 aaPredicted RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SLC35F4A4IF30 521 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 MBD3L4A6NDZ8 208 aaPredicted RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 MBD3L3A6NE82 208 aaPredicted RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 MBD3L5A6NJ08 208 aaPredicted RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 PRKYO43930 277 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 HOXD4P09016 255 aaPredicted RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CDKN2AP42771 156 aaKnown RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 PCYT1AP49585 367 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GTF2IRD2BQ6EKJ0 949 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 PTCHD4Q6ZW05 846 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GTF2IRD2Q86UP8 949 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TCEANCQ8N8B7 351 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SDR9C7Q8NEX9 313 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 MBD3L2Q8NHZ7 208 aaPredicted RBP16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TEX12Q9BXU0 123 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ANKRD60Q9BZ19 345 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ZNF226Q9NYT6 803 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 RNF6Q9Y252 685 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GPR52Q9Y2T5 361 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 LRRC42Q9Y546 428 aa16.8■□□□□ 0.28
TNFRSF1A-213ENST00000540022 DIDO1Q9BTC0 2240 aaKnown RBP16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ZNF724A8MTY0 619 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GPR171O14626 319 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ARHGEF9O43307 516 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 YES1P07947 543 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 IL18R1Q13478 541 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ENTHD1Q8IYW4 607 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 OR6X1Q8NH79 312 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 HDAC2Q92769 488 aaKnown RBP16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 IL4I1Q96RQ9 567 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 NMNAT3Q96T66 252 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 APOL4Q9BPW4 351 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 PRRG3Q9BZD7 231 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 IMPAD1Q9NX62 359 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 AASSQ9UDR5 926 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SH3BGRL2Q9UJC5 107 aa16.79■□□□□ 0.28
TNFRSF1A-213ENST00000540022 RIIAD1A6NNX1 92 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 H7C1C5 153 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TRMUO75648 421 aaKnown RBP16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ZNF432O94892 652 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TOXO94900 526 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 ISL1P61371 349 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 LCN6P62502 163 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 DBPQ10586 325 aaPredicted RBP16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CAMK2DQ13557 499 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CRMP1Q14194 572 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 B3GNT6Q6ZMB0 384 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 C8orf59Q8N0T1 100 aaPredicted RBP16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GCNT2Q8N0V5 402 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 DEPDC4Q8N2C3 294 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 CYB561A3Q8NBI2 242 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 SLC37A3Q8NCC5 494 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 NPEPL1Q8NDH3 523 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TMEM45BQ96B21 275 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GMPPAQ96IJ6 420 aaPredicted RBP16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 PLEKHA8Q96JA3 519 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 DDOQ99489 341 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 TM9SF2Q99805 663 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 GP6Q9HCN6 339 aa16.78■□□□□ 0.28
TNFRSF1A-213ENST00000540022 RASSF1Q9NS23 344 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms