RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 STAMBPO95630 424 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 MT-ATP6P00846 226 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 BGLAPP02818 100 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 HIST1H2ABP04908 130 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 ADRA2AP08913 450 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 ADORA3P0DMS8 318 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 IGFBP5P24593 272 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 PTDSS1P48651 473 aaKnown RBP12.75□□□□□ -0.37
VPS28-215ENST00000531924 CSNK1A1P48729 337 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 PHYHD1Q5SRE7 291 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 IL17RELQ6ZVW7 336 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 HIST3H2AQ7L7L0 130 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 PXKQ7Z7A4 578 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 MYPOPQ86VE0 399 aaPredicted RBP12.75□□□□□ -0.37
VPS28-215ENST00000531924 ZCCHC24Q8N2G6 241 aaKnown RBP12.75□□□□□ -0.37
VPS28-215ENST00000531924 C10orf111Q8N326 155 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 SLC26A7Q8TE54 656 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 UBASH3BQ8TF42 649 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 HIST1H2ACQ93077 130 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 SLC41A3Q96GZ6 507 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 TXNDC15Q96J42 360 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 ATP6V1G3Q96LB4 118 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 MOGAT1Q96PD6 335 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 DOK1Q99704 481 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 IKZF5Q9H5V7 419 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 NOX3Q9HBY0 568 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 LEF1Q9UJU2 399 aaPredicted RBP12.75□□□□□ -0.37
VPS28-215ENST00000531924 FBXL3Q9UKT7 428 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 TRIM33Q9UPN9 1127 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 NDUFAF1Q9Y375 327 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 GMEB1Q9Y692 573 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 TRBV5-3A0A0A0MS03 114 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 ZNF503-AS2A6NEH8 195 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 C11orf98E9PRG8 122 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 M0R3H8 397 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 PLPP3O14495 311 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 FMO6PO60774 539 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 MFN2O95140 757 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 C8BP07358 591 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 IFNGR1P15260 489 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 B4GALT1P15291 398 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 NR4A1P22736 598 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 RBBP4Q09028 425 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 RUNDC3AQ59EK9 446 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 ZNF613Q6PF04 617 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 DHDDSQ86SQ9 333 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 CDK20Q8IZL9 346 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 OR5J2Q8NH18 312 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 CPPED1Q9BRF8 314 aaPredicted RBP12.74□□□□□ -0.37
VPS28-215ENST00000531924 RSPO3Q9BXY4 272 aaPredicted RBP12.74□□□□□ -0.37
VPS28-215ENST00000531924 DENND2DQ9H6A0 471 aaPredicted RBP12.74□□□□□ -0.37
VPS28-215ENST00000531924 REV1Q9UBZ9 1251 aa12.74□□□□□ -0.37
VPS28-215ENST00000531924 LRP5LA4QPB2 252 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 CPSF4LA6NMK7 179 aaKnown RBP12.73□□□□□ -0.37
VPS28-215ENST00000531924 LRRN3E7EW58 273 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 M0QX08 132 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 M0R233 179 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 UBL3O95164 117 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 GIFP27352 417 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 APEX1P27695 318 aaKnown RBP12.73□□□□□ -0.37
VPS28-215ENST00000531924 THBS2P35442 1172 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 GIPRP48546 466 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 BIDP55957 195 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 RPS23P62266 143 aaKnown RBP12.73□□□□□ -0.37
VPS28-215ENST00000531924 RAB1AP62820 205 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 TTC33Q6PID6 262 aaPredicted RBP12.73□□□□□ -0.37
VPS28-215ENST00000531924 UGT2A3Q6UWM9 527 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 DLEU7Q6UYE1 221 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 SLC30A8Q8IWU4 369 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 ZNF786Q8N393 782 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 VANGL1Q8TAA9 524 aaPredicted RBP12.73□□□□□ -0.37
VPS28-215ENST00000531924 MS4A3Q96HJ5 214 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 SNX18Q96RF0 628 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 FOXB1Q99853 325 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 TPK1Q9H3S4 243 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 MS4A5Q9H3V2 200 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 SLC52A3Q9NQ40 469 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 INTS9Q9NV88 658 aaKnown RBP12.73□□□□□ -0.37
VPS28-215ENST00000531924 B3GNT2Q9NY97 397 aa12.73□□□□□ -0.37
VPS28-215ENST00000531924 RNF13O43567 381 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 CHP2O43745 196 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 SYNGR3O43761 229 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 TPST2O60704 377 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 FARS2O95363 451 aaKnown RBP12.72□□□□□ -0.37
VPS28-215ENST00000531924 CH25HO95992 272 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 OPN1SWP03999 348 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 UMPSP11172 480 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 SRP14P37108 136 aaKnown RBP12.72□□□□□ -0.37
VPS28-215ENST00000531924 EVX1P49640 407 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 MTPNP58546 118 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 NFYCQ13952 458 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 ENTPD8Q5MY95 495 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 INTS11Q5TA45 600 aaKnown RBP12.72□□□□□ -0.37
VPS28-215ENST00000531924 LIPNQ5VXI9 398 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 PIWIL3Q7Z3Z3 882 aaKnown RBP12.72□□□□□ -0.37
VPS28-215ENST00000531924 PATL1Q86TB9 770 aaKnown RBP12.72□□□□□ -0.37
VPS28-215ENST00000531924 HPS1Q92902 700 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 MRPL24Q96A35 216 aaKnown RBP12.72□□□□□ -0.37
VPS28-215ENST00000531924 THOC1Q96FV9 657 aaKnown RBP12.72□□□□□ -0.37
VPS28-215ENST00000531924 ARHGDIGQ99819 225 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms