RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	OTUB1	Q96FW1	271 aa	Predicted RBP	5.07	□□□□□ -1.6
CD44-231	ENST00000531110	CERS2	Q96G23	380 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	SENP8	Q96LD8	212 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	PRRC1	Q96M27	445 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM56	Q96MV1	263 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	TRIM51	Q9BSJ1	452 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	RIOK2	Q9BVS4	552 aa	Known RBP	5.07	□□□□□ -1.6
CD44-231	ENST00000531110	TPPP3	Q9BW30	176 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	SEC11C	Q9BY50	192 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	ELOVL4	Q9GZR5	314 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	SLC38A1	Q9H2H9	487 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	DPEP2	Q9H4A9	486 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	HCN3	Q9P1Z3	774 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	DHCR7	Q9UBM7	475 aa	Known RBP	5.07	□□□□□ -1.6
CD44-231	ENST00000531110	FBXL2	Q9UKC9	423 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	PITPNC1	Q9UKF7	332 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	SLC35A3	Q9Y2D2	325 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	WIF1	Q9Y5W5	379 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM56-RWDD3	S4R434	201 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	MRC1	P22897	1456 aa		5.07	□□□□□ -1.6
CD44-231	ENST00000531110	PRG4	Q92954	1404 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	IGSF9B	Q9UPX0	1349 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	MEIKIN	A0A087WXM9	373 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	NPIPA5	A0A0B4J1W7	369 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TRBV11-1	A0A0K0K1C0	115 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110		A0A1W2PRV1	198 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CD8B2	A6NJW9	211 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	FAM90A7P	A6NKC0	464 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	COLCA2	A8K830	154 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	FAM90A22P	A8MWA6	464 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	FAM90A12P	A8MX19	464 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	FAM90A23P	A8MXZ1	464 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	EFCAB9	A8MZ26	197 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	NPIPA5	E9PKD4	350 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	NPIPA3	F8WFD2	350 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TGFB1I1	O43294	461 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	NME2P1	O60361	137 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TBX19	O60806	448 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	RGS11	O94810	467 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	MPC2	O95563	127 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ACSL3	O95573	720 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	IGHE	P01854	428 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	RPN2	P04844	631 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CHRM4	P08173	479 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	HMBS	P08397	361 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	H2AFZ	P0C0S5	128 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	UQCRFS1P1	P0C7P4	283 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	SLC2A2	P11168	524 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	HOXB2	P14652	356 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF44	P15621	663 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF7	P17097	686 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CSNK2A2	P19784	350 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	MAG	P20916	626 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CD82	P27701	267 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	HTR2C	P28335	458 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	POLR2I	P36954	125 aa	Known RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CD200	P41217	278 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	GPR12	P47775	334 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	IDH2	P48735	452 aa	Known RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	PDLIM4	P50479	330 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	FOXG1	P55316	489 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CLDN18	P56856	261 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	UBE2G2	P60604	165 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	RPS6	P62753	249 aa	Known RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	PPIG	Q13427	754 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	GTF2H2	Q13888	395 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	PRPSAP1	Q14558	356 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	IL13RA2	Q14627	380 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	UBE2S	Q16763	222 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	DUOXA1	Q1HG43	343 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF260	Q3ZCT1	412 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	LGALSL	Q3ZCW2	172 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CBWD6	Q4V339	395 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	PYY3	Q5JQD4	70 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	SAMD4B	Q5PRF9	694 aa	Known RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CARD17	Q5XLA6	110 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	GTF2H2C	Q6P1K8	395 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM270	Q6UE05	265 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	PRSS55	Q6UWB4	352 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CLEC18B	Q6UXF7	455 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	QSOX2	Q6ZRP7	698 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	H2AFV	Q71UI9	128 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ABHD13	Q7L211	337 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	SERPINA11	Q86U17	422 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CATSPERD	Q86XM0	798 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CLDN22	Q8N7P3	220 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	NECAP1	Q8NC96	275 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM161B	Q8NDZ6	487 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	OR5L2	Q8NGL0	311 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	OR10R2	Q8NGX6	335 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	OR8U1	Q8NH10	309 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	OR4C6	Q8NH72	309 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM170A	Q8WVE7	144 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TFB1M	Q8WVM0	346 aa	Known RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TAAR8	Q969N4	342 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	RCN3	Q96D15	328 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	BPIFA2	Q96DR5	249 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CD180	Q99467	661 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	EPYC	Q99645	322 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	GINS4	Q9BRT9	223 aa		5.06	□□□□□ -1.6

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