RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TMEM38AQ9H6F2 299 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 MED29Q9NX70 200 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 MRPL39Q9NYK5 338 aaKnown RBP9.79□□□□□ -0.84
VPS28-214ENST00000531032 ZNF224Q9NZL3 707 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 CCDC167Q9P0B6 97 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 VAPAQ9P0L0 249 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 SLAMF8Q9P0V8 285 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 CMAHPQ9Y471 501 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 NOX1Q9Y5S8 564 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 ANK2Q01484 3957 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 NBEAL1Q6ZS30 2694 aa9.79□□□□□ -0.84
VPS28-214ENST00000531032 TPST2O60704 377 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 CD79AP11912 226 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 B4GALT1P15291 398 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 GPX2P18283 190 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 CDH15P55291 814 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 RGS8P57771 180 aaPredicted RBP9.78□□□□□ -0.84
VPS28-214ENST00000531032 NCALDP61601 193 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 SCARB2Q14108 478 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 OR1Q1Q15612 314 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 TRIP10Q15642 601 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 AGKQ53H12 422 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 PAGE3Q5JUK9 113 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 SWT1Q5T5J6 900 aaKnown RBP9.78□□□□□ -0.84
VPS28-214ENST00000531032 ZNF813Q6ZN06 617 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 PXKQ7Z7A4 578 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 RFLNBQ8N5W9 214 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 BHLHE22Q8NFJ8 381 aaPredicted RBP9.78□□□□□ -0.84
VPS28-214ENST00000531032 THOC1Q96FV9 657 aaKnown RBP9.78□□□□□ -0.84
VPS28-214ENST00000531032 TXNDC15Q96J42 360 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 MOGAT1Q96PD6 335 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 SNX18Q96RF0 628 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 ZNF607Q96SK3 696 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 FOXB1Q99853 325 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 WFDC6Q9BQY6 131 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 TMEM43Q9BTV4 400 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 MRPL37Q9BZE1 423 aaKnown RBP9.78□□□□□ -0.84
VPS28-214ENST00000531032 RABEP2Q9H5N1 569 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 IKZF5Q9H5V7 419 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 DENND2DQ9H6A0 471 aaPredicted RBP9.78□□□□□ -0.84
VPS28-214ENST00000531032 EVA1AQ9H8M9 152 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 TMEM27Q9HBJ8 222 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 B3GAT2Q9NPZ5 323 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 SELENONQ9NZV5 590 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.78□□□□□ -0.84
VPS28-214ENST00000531032 TRIM33Q9UPN9 1127 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 CORO2BQ9UQ03 480 aa9.78□□□□□ -0.84
VPS28-214ENST00000531032 M0R233 179 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 PLPP3O14495 311 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 SYNGR3O43761 229 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 SERPINB7O75635 380 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 IFNGR1P15260 489 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 SLC6A2P23975 617 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 GLRXP35754 106 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 ATP4BP51164 291 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 CDH12P55289 794 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 PIGFQ07326 219 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 PMS2P3Q13401 168 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 CAMK2DQ13557 499 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 FXNQ16595 210 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 LIPNQ5VXI9 398 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 UGT2A3Q6UWM9 527 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 RANBP3LQ86VV4 465 aaPredicted RBP9.77□□□□□ -0.85
VPS28-214ENST00000531032 SNX32Q86XE0 403 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 HIPK4Q8NE63 616 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 OR6N1Q8NGY5 312 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 RNF217Q8TC41 542 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 ULBP2Q9BZM5 246 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 TPK1Q9H3S4 243 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 NPHS2Q9NP85 383 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 REV1Q9UBZ9 1251 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 TMEFF2Q9UIK5 374 aaPredicted RBP9.77□□□□□ -0.85
VPS28-214ENST00000531032 POFUT2Q9Y2G5 429 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 SPEF1Q9Y4P9 236 aa9.77□□□□□ -0.85
VPS28-214ENST00000531032 A0A0G2JND7 137 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 ZNF726A6NNF4 738 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 EVPLLA8MZ36 301 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 LRRN3E7EW58 273 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 LYNX1G3V0Z9 82 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 FMO6PO60774 539 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 MFN2O95140 757 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 UBL3O95164 117 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 MT-ATP6P00846 226 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 C8BP07358 591 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 LYNX1P0DP58 116 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 AHCYP23526 432 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 AQP1P29972 269 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 GIPRP48546 466 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 PTDSS1P48651 473 aaKnown RBP9.76□□□□□ -0.85
VPS28-214ENST00000531032 DVL1P1P54792 670 aaPredicted RBP9.76□□□□□ -0.85
VPS28-214ENST00000531032 PCBP3P57721 371 aaKnown RBP9.76□□□□□ -0.85
VPS28-214ENST00000531032 RPS23P62266 143 aaKnown RBP9.76□□□□□ -0.85
VPS28-214ENST00000531032 TRMT5Q32P41 509 aaKnown RBP9.76□□□□□ -0.85
VPS28-214ENST00000531032 ELFN2Q5R3F8 820 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 ZNF613Q6PF04 617 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 LINC00114Q6XXX2 140 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 ARMC8Q8IUR7 673 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 OR5J2Q8NH18 312 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 CPPED1Q9BRF8 314 aaPredicted RBP9.76□□□□□ -0.85
VPS28-214ENST00000531032 MS4A5Q9H3V2 200 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms