RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TMEM186Q96B77 213 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 ANKRD27Q96NW4 1050 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 TSPAN32Q96QS1 320 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 FAM107BQ9H098 131 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 BCL2L10Q9HD36 194 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 DYNLRB1Q9NP97 96 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 ESM1Q9NQ30 184 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 G6PC2Q9NQR9 355 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 SDR39U1Q9NRG7 319 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-201ENST00000526271 ZNF275Q9NSD4 429 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-201ENST00000526271 HIF1ANQ9NWT6 349 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 MED29Q9NX70 200 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 REV1Q9UBZ9 1251 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 METRNQ9UJH8 293 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 TRIM33Q9UPN9 1127 aa12.23□□□□□ -0.45
CPSF1-201ENST00000526271 PRKDCP78527 4128 aaKnown RBP12.23□□□□□ -0.45
CPSF1-201ENST00000526271 A0A096LPI6 279 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 TMEM89A2RUT3 159 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 B4DSR2 109 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 RFXANKO14593 260 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 SYNGR3O43761 229 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 BGLAPP02818 100 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 ZCCHC18P0CG32 403 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 GAAP10253 952 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 BMP2P12643 396 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 UQCRBP14927 111 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 PAX7P23759 505 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 CRISP3P54108 245 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 GNA13Q14344 377 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 MFSD13AQ14CX5 517 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 CARD17Q5XLA6 110 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 THSD4Q6ZMP0 1018 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 GTF3AQ92664 365 aaKnown RBP12.22□□□□□ -0.45
CPSF1-201ENST00000526271 MOGAT1Q96PD6 335 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 PAIP1Q9H074 479 aaKnown RBP12.22□□□□□ -0.45
CPSF1-201ENST00000526271 RABEP2Q9H5N1 569 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 OCEL1Q9H607 264 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 SLC25A37Q9NYZ2 338 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 ZIM2Q9NZV7 527 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 CMAHPQ9Y471 501 aa12.22□□□□□ -0.45
CPSF1-201ENST00000526271 M0R233 179 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 DEAF1O75398 565 aaPredicted RBP12.21□□□□□ -0.45
CPSF1-201ENST00000526271 KRT75O95678 551 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 CLPTM1O96005 669 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 MSMBP08118 114 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 NAT2P11245 290 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 B4GALT1P15291 398 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 NCF2P19878 526 aaPredicted RBP12.21□□□□□ -0.45
CPSF1-201ENST00000526271 GLRXP35754 106 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 RBMXP38159 391 aaKnown RBP12.21□□□□□ -0.45
CPSF1-201ENST00000526271 CRATP43155 626 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 MAGEB1P43366 347 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 EVX1P49640 407 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 ERVS71-1P61550 626 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 COPZ1P61923 177 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 MIER2Q8N344 545 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 GPR137CQ8N3F9 429 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 TRIML2Q8N7C3 387 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 ZFAND2BQ8WV99 257 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 LRRC37BQ96QE4 947 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 SLAMF8Q9P0V8 285 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 USP22Q9UPT9 525 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 PCDHB14Q9Y5E9 798 aa12.21□□□□□ -0.45
CPSF1-201ENST00000526271 TANC2Q9HCD6 1990 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 LOC105371242A0A075B767 164 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 A0A087WUJ7 227 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 A0A0G2JPF8 293 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 HNRNPCL2B2RXH8 293 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 HNRNPCL3B7ZW38 293 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 AIM2O14862 343 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 HNRNPCL1O60812 293 aaKnown RBP12.2□□□□□ -0.46
CPSF1-201ENST00000526271 SLC22A3O75751 556 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 HNRNPCL4P0DMR1 293 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 SAGP10523 405 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-201ENST00000526271 ACHEP22303 614 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 GPR6P46095 362 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-201ENST00000526271 GIPRP48546 466 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 HILS1P60008 231 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 RAB39AQ14964 217 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 RGNQ15493 299 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 TUSC1Q2TAM9 212 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 ALKBH6Q3KRA9 238 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 ZNF311Q5JNZ3 666 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 FAM69AQ5T7M9 428 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 ZNF813Q6ZN06 617 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 H1FNTQ75WM6 255 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-201ENST00000526271 GLCCI1Q86VQ1 547 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 TSPYL5Q86VY4 417 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-201ENST00000526271 SKA3Q8IX90 412 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 LSMEM1Q8N8F7 131 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 GLB1L3Q8NCI6 653 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-201ENST00000526271 ADPRHL1Q8NDY3 354 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 GTF2H4Q92759 462 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 TMPRSS13Q9BYE2 586 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 IKZF5Q9H5V7 419 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 A4GALTQ9NPC4 353 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 SLC52A3Q9NQ40 469 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 SAR1AQ9NR31 198 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 PRDM4Q9UKN5 801 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 ARL2BPQ9Y2Y0 163 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms