RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 A0A1B0GX30 115 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 GLTPD2A6NH11 291 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 PPP1R11O60927 126 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 GM2AP17900 193 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 ENPP1P22413 925 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 SHC1P29353 583 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 FCGR2CP31995 323 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 IDUAP35475 653 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 DHODHQ02127 395 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 PNRC1Q12796 327 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 RUNX2Q13950 521 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF787Q6DD87 383 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 OR2L13Q8N349 312 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 CISD2Q8N5K1 135 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 GPX8Q8TED1 209 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 PCNPQ8WW12 178 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 C2orf50Q96LR7 162 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 MS4A10Q96PG2 267 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 NUDT22Q9BRQ3 303 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 HERPUD2Q9BSE4 406 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 SYT17Q9BSW7 474 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 TRAPPC4Q9Y296 219 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC22A20A6NK97 555 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 DVL1O14640 695 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 FPR3P25089 353 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 DVL1P1P54792 670 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 ZP2Q05996 745 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 PJVKQ0ZLH3 352 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 HYAL2Q12891 473 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 CTU2Q2VPK5 515 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 DGAT2L6Q6ZPD8 337 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 MBOAT2Q6ZWT7 520 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 NANOGP1Q8N7R0 232 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 OR2AE1Q8NHA4 323 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 DYRK2Q92630 601 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC35E1Q96K37 410 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 STRADBQ9C0K7 418 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 DMRT3Q9NQL9 472 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 GALR3O60755 368 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 CSO75390 466 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 OR5H8P0DN80 308 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 HAPLN1P10915 354 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 PCBP4P57723 403 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 PKIAP61925 76 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 TOMM34Q15785 309 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 LETMD1Q6P1Q0 360 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 OTOP2Q7RTS6 562 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 MISPQ8IVT2 679 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 OR2AK2Q8NG84 335 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 OR5AP2Q8NGF4 316 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 HMGB4Q8WW32 186 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM3CQ92520 227 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 SELENOIQ9C0D9 397 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 POFUT1Q9H488 388 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 RHOFQ9HBH0 211 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 LHX6Q9UPM6 363 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 PTGDR2Q9Y5Y4 395 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 TNS2Q63HR2 1409 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 RNASEK-C17orf49H0YIS7 233 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 M0R1X1 148 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC31A2O15432 143 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 LDB2O43679 373 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 OR7C1O76099 320 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 GCSHP23434 173 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 DAPP51397 102 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 CCR6P51684 374 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 UBE2MP61081 183 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 TMEM182Q6ZP80 229 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 FA2HQ7L5A8 372 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 MTMR14Q8NCE2 650 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 KLHDC7BQ96G42 594 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 SCMH1Q96GD3 660 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 MAP3K3Q99759 626 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 MACROD1Q9BQ69 325 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 GINS3Q9BRX5 216 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 TIMM29Q9BSF4 260 aa10.42□□□□□ -0.74
LIMCH1-217ENST00000512946 KLRG2A4D1S0 409 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SOCS6O14544 535 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 TSPAN12O95859 305 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SMIM18P0DKX4 95 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 RRASP10301 218 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC35A2P78381 396 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 PM20D1Q6GTS8 502 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 VRK3Q8IV63 474 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SECTM1Q8WVN6 248 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 C11orf84Q9BUA3 381 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 GPR173Q9NS66 373 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 B3GAT1Q9P2W7 334 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 TRAPPC2LQ9UL33 140 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 CFAP20Q9Y6A4 193 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 C1orf167Q5SNV9 1468 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 CEP152O94986 1710 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 RGS13O14921 159 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 RACK1P63244 317 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 ENTPD8Q5MY95 495 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 FFAR4Q5NUL3 377 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 OR4F5Q8NH21 305 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 OR4F4Q96R69 305 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 CORINQ9Y5Q5 1042 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SLCO1B1Q9Y6L6 691 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms