RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TRAV1-2A0A0B4J238 106 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 IFITM5A6NNB3 132 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF727A8MUV8 499 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 CLUP10909 449 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 HOXA11P31270 313 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 SERPINF1P36955 418 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 PNLIPRP1P54315 467 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 TAS2R50P59544 299 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 TMEM115Q12893 351 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 DUSP5Q16690 384 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 FAM46CQ5VWP2 391 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 TFGQ92734 400 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 CCNL2Q96S94 520 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF607Q96SK3 696 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 G6PC3Q9BUM1 346 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 TWSG1Q9GZX9 223 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 CXorf36Q9H7Y0 433 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 TRPC4Q9UBN4 977 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 OR5V1Q9UGF6 321 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 A0A1B0GV50 99 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 UMAD1C9J7I0 102 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 H3BSH0 61 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 INSIG1O15503 277 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 IGLV3-25P01717 112 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 GYPBP06028 91 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 HNF1AP20823 631 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 NT5EP21589 574 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 HSD3B2P26439 372 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 OR1G1P47890 313 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 DHRS2Q13268 280 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 NFATC2Q13469 925 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 PGGHGQ32M88 737 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 GGTA1PQ4G0N0 100 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ARMC6Q6NXE6 501 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF343Q6P1L6 599 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 HEPN1Q6WQI6 88 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 PLPPR4Q7Z2D5 763 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 RABEPKQ7Z6M1 372 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 FAM129CQ86XR2 697 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ANGPTL5Q86XS5 388 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 NEK7Q8TDX7 302 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 NOL4LQ96MY1 436 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 MYADMQ96S97 322 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ACTRT3Q9BYD9 372 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 MYOZ1Q9NP98 299 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 UBQLN4Q9NRR5 601 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 SEMA4GQ9NTN9 838 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 CRLS1Q9UJA2 301 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ANKRD31Q8N7Z5 1873 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 MEIS3P2A8K0S8 358 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 M0QYG6 137 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 OR1F1O43749 312 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 PQBP1O60828 265 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 AKAIN1P0CW23 69 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 SRMP19623 302 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 DPP4P27487 766 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 TIA1P31483 386 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 TOMM34Q15785 309 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 PRSS53Q2L4Q9 553 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 ARSJQ5FYB0 599 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 FAM182BQ5T319 152 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 PWWP2BQ6NUJ5 590 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 OR4K14Q8NGD5 310 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 OR52A5Q9H2C5 316 aa11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 FARSAQ9Y285 508 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-213ENST00000511496 XRCC3O43542 346 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 FGBP02675 491 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 TRGC2P03986 189 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 FCGR3AP08637 254 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 MMP7P09237 267 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 OR13C7P0DN81 318 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 NR2F1P10589 423 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 S100A7P31151 101 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 CEACAM6P40199 344 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 PSMB10P40306 273 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 PPP2CBP62714 309 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 PPP2CAP67775 309 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 FRRS1Q6ZNA5 592 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 BEND2Q8NDZ0 799 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 OR1J1Q8NGS3 322 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 NTNG2Q96CW9 530 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 RIOK2Q9BVS4 552 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 NRIP3Q9NQ35 241 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 TRPV2Q9Y5S1 764 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 LOC285556D6RIA3 1793 aa11.02□□□□□ -0.64
LIMCH1-213ENST00000511496 BTAF1O14981 1849 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 COL11A1P12107 1806 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 COL14A1Q05707 1796 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 RALGAPA2Q2PPJ7 1873 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 A0A0G2JN53 185 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBX18O95935 607 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TGFB1P01137 390 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TYMPP19971 482 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 CR2P20023 1033 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 IFNGR2P38484 337 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 CEBPGP53567 150 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 CARD18P57730 90 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 EFEMP1Q12805 493 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 HSPB3Q12988 150 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms