RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SLC22A11Q9NSA0 550 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CUTCQ9NTM9 273 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IER3IP1Q9Y5U9 82 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FADS1O60427 444 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CXCL3P19876 107 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SHC1P29353 583 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CCKBRP32239 447 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SNRPEP62304 92 aaKnown RBP9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RPS27AP62979 156 aaKnown RBP9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 UBA52P62987 128 aaKnown RBP9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 Q3ZCU0 254 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LGALSLQ3ZCW2 172 aaPredicted RBP9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TMEM184AQ6ZMB5 413 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NAA40Q86UY6 237 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PLXDC1Q8IUK5 500 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FOXRED2Q8IWF2 684 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR6V1Q8N148 313 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR1J4Q8NGS1 313 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NSMAFQ92636 917 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 BPIFA2Q96DR5 249 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SENP5Q96HI0 755 aaPredicted RBP9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TNFRSF13CQ96RJ3 184 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GDF15Q99988 308 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PLA2G12AQ9BZM1 189 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C20orf85Q9H1P6 137 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR52D1Q9H346 318 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GAREM1Q9H706 876 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 AK6Q9Y3D8 172 aaKnown RBP9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRBV5-3A0A0A0MS03 114 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NAP1L6A6NFF2 107 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PATE3B3GLJ2 98 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SFTPDP35247 375 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 AQP2P41181 271 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SSTP61278 116 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PRAMEF20Q5VT98 475 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HBMQ6B0K9 141 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 BBS1Q8NFJ9 593 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR52I1Q8NGK6 324 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 APH1BQ8WW43 257 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SGK3Q96BR1 496 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR2A5Q96R48 311 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FBRSQ9HAH7 460 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ENTPD2Q9Y5L3 495 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RNF215Q9Y6U7 377 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 A0A0A6YYD5 115 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF749O43361 778 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SNRNP70P08621 437 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 UCHL1P09936 223 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SNRPBP14678 240 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CD27P26842 260 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CD1CP29017 333 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 AFF3P51826 1226 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TAS2R43P59537 309 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DYRK1AQ13627 763 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MAPK14Q16539 360 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TP53I3Q53FA7 332 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FAM74A1Q5RGS3 127 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PAPD4Q6PIY7 484 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DPPA2Q7Z7J5 298 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TMEM156Q8N614 296 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF248Q8NDW4 579 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR6S1Q8NH40 331 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 BAHD1Q8TBE0 780 aaPredicted RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RNF170Q96K19 258 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SORCS2Q96PQ0 1159 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SDF2Q99470 211 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GABRG3Q99928 467 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CMSS1Q9BQ75 279 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRDV1A0A1B0GX56 115 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FAM221BA6H8Z2 402 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 UNC119BA6NIH7 251 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PTP4A3O75365 173 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FBXO45P0C2W1 286 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DLSTP36957 453 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ETV5P41161 510 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 UBE2IP63279 158 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RNF212Q495C1 297 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FAM199XQ6PEV8 388 aaPredicted RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZAR1Q86SH2 424 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GJD3Q8N144 294 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR2T4Q8NH00 348 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PRRC1Q96M27 445 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GPR137Q96N19 417 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IER2Q9BTL4 223 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 S1PR5Q9H228 398 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 METTL7AQ9H8H3 244 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SIRT3Q9NTG7 399 aaPredicted RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZSCAN32Q9NX65 697 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FARSAQ9Y285 508 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RNF13O43567 381 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ALOX12BO75342 701 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IFNA17P01571 189 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IGHV4-34P06331 123 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CLUP10909 449 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRHRP34981 398 aaPredicted RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GUCA1AP43080 201 aaPredicted RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CRYBB2P43320 205 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LUMP51884 338 aaPredicted RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF529Q6P280 563 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MED25Q71SY5 747 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms