RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MOKQ9UQ07 419 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CXCR6O00574 342 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 NME4O00746 187 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 SEC14L2O76054 403 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 IGHV4-39P01824 125 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 MT-ND1P03886 318 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 ASAH2BP0C7U1 165 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 BMP4P12644 408 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 SEC24CP53992 1094 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 UGT2B15P54855 530 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 SELENOWP63302 87 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 ZP4Q12836 540 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 PIN1Q13526 163 aaPredicted RBP13.15□□□□□ -0.3
USP39-217ENST00000491659 SLC35D2Q76EJ3 337 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 SLC46A3Q7Z3Q1 461 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 NKAIN4Q8IVV8 208 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 CIARTQ8N365 385 aaPredicted RBP13.15□□□□□ -0.3
USP39-217ENST00000491659 LRRC17Q8N6Y2 441 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 FAM169BQ8N8A8 192 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 TMEM255BQ8WV15 326 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 TMEM239Q8WW34 195 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 CMTM5Q96DZ9 223 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 ZNF837Q96EG3 531 aaPredicted RBP13.15□□□□□ -0.3
USP39-217ENST00000491659 PRRC1Q96M27 445 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 MEPEQ9NQ76 525 aaPredicted RBP13.15□□□□□ -0.3
USP39-217ENST00000491659 POFUT2Q9Y2G5 429 aa13.15□□□□□ -0.3
USP39-217ENST00000491659 ZNF682O95780 498 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 IGF2P01344 180 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 IGKV3-15P01624 115 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 IGLV1-44P01699 117 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 IFNW1P05000 195 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 HEXAP06865 529 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 CECR9P0C854 216 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 CBR1P16152 277 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 APOBEC3AP31941 199 aaPredicted RBP13.14□□□□□ -0.31
USP39-217ENST00000491659 LSP1P33241 339 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 ARR3P36575 388 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 GSK3BP49841 420 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 IDH3GP51553 393 aaPredicted RBP13.14□□□□□ -0.31
USP39-217ENST00000491659 NUDT6P53370 316 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 NAAAQ02083 359 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 CHRNB3Q05901 458 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 ST3GAL3Q11203 375 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 C11orf71Q6IPW1 123 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 ZNF813Q6ZN06 617 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 CPLX4Q7Z7G2 160 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 OR6X1Q8NH79 312 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 PFN4Q8NHR9 129 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 NANOS1Q8WY41 292 aaKnown RBP13.14□□□□□ -0.31
USP39-217ENST00000491659 SGTBQ96EQ0 304 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 MYLK2Q9H1R3 596 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 TAS2R5Q9NYW4 299 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 GDF2Q9UK05 429 aaPredicted RBP13.14□□□□□ -0.31
USP39-217ENST00000491659 MED31Q9Y3C7 131 aa13.14□□□□□ -0.31
USP39-217ENST00000491659 A0A1W2PRG6 482 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 MCIDASD6RGH6 385 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 BLOC1S5-TXNDC5H3BN57 136 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 SNX3O60493 162 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 OR7A10O76100 309 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 B4GALT1P15291 398 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 PRDX6P30041 224 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 ACVR1BP36896 505 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 NPRL3Q12980 569 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 TNK1Q13470 666 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 MELKQ14680 651 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 C8orf82Q6P1X6 216 aaPredicted RBP13.13□□□□□ -0.31
USP39-217ENST00000491659 NHLRC1Q6VVB1 395 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 Q71RC1 249 aaPredicted RBP13.13□□□□□ -0.31
USP39-217ENST00000491659 HDDC2Q7Z4H3 204 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 MDP1Q86V88 176 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 OR4F15Q8NGB8 312 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 GEMIN6Q8WXD5 167 aaKnown RBP13.13□□□□□ -0.31
USP39-217ENST00000491659 ZNF566Q969W8 418 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 FAM162AQ96A26 154 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 FOXB1Q99853 325 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 KCTD14Q9BQ13 255 aaPredicted RBP13.13□□□□□ -0.31
USP39-217ENST00000491659 GMPR2Q9P2T1 348 aaKnown RBP13.13□□□□□ -0.31
USP39-217ENST00000491659 PMF1-BGLAPU3KQ54 211 aa13.13□□□□□ -0.31
USP39-217ENST00000491659 SETD2Q9BYW2 2564 aaPredicted RBP13.13□□□□□ -0.31
USP39-217ENST00000491659 H7C417 338 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 NDUFS7O75251 213 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 ENTPD5O75356 428 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 BCL10O95999 233 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 IGHG1P01857 330 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 CELA3BP08861 270 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 CD79AP11912 226 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 FUT1P19526 365 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 DRD4P21917 467 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 PSME3P61289 254 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 RPL18Q07020 188 aaKnown RBP13.12□□□□□ -0.31
USP39-217ENST00000491659 IFI44LQ53G44 452 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 CBLL1Q75N03 491 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 ZNF627Q7L945 461 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 VTCN1Q7Z7D3 282 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 WDFY1Q8IWB7 410 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 OFCC1Q8IZS5 231 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 TMEM54Q969K7 222 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 FBXO17Q96EF6 278 aa13.12□□□□□ -0.31
USP39-217ENST00000491659 SLC25A44Q96H78 314 aaPredicted RBP13.12□□□□□ -0.31
USP39-217ENST00000491659 CA10Q9NS85 328 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms