RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ZNF707Q96C28 371 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 C12orf43Q96C57 262 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ISOC1Q96CN7 298 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 DUS3LQ96G46 650 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TPD52L3Q96J77 140 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF514Q96K75 400 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CNBD2Q96M20 576 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FAM218AQ96MZ4 157 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SERPINB11Q96P15 392 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 QKIQ96PU8 341 aaKnown RBP eCLIP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FAM111AQ96PZ2 611 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 KCNA7Q96RP8 456 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CYP2S1Q96SQ9 504 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PFDN5Q99471 154 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FAM213AQ9BRX8 229 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TTYH2Q9BSA4 534 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 C1orf50Q9BV19 199 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GSDMCQ9BYG8 508 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NFKBIZQ9BYH8 718 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 POTEKPQ9BYX7 375 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OSBPL8Q9BZF1 889 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 STRADBQ9C0K7 418 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SLC22A4Q9H015 551 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ILKAPQ9H0C8 392 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 WWP1Q9H0M0 922 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ALX4Q9H161 411 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 HSD3B7Q9H2F3 369 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 BLZF1Q9H2G9 400 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PARLQ9H300 379 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR51M1Q9H341 326 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 Q9H521 79 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LRRC40Q9H9A6 602 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CAB39LQ9H9S4 337 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MAGEF1Q9HAY2 307 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MRPS30Q9NP92 439 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 IL1RAPQ9NPH3 570 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 BIN3Q9NQY0 253 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GDF3Q9NR23 364 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 POLE4Q9NR33 117 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 HEBP1Q9NRV9 189 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 C19orf12Q9NSK7 152 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ACOXLQ9NUZ1 547 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 EXD2Q9NVH0 621 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 DNAJC17Q9NVM6 304 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SMOXQ9NWM0 555 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 IMPAD1Q9NX62 359 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NINJ2Q9NZG7 142 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CCDC59Q9P031 241 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ABCD2Q9UBJ2 740 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 DNAJB9Q9UBS3 223 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CTSFQ9UBX1 484 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MIOXQ9UGB7 285 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MLXQ9UH92 298 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 STOML2Q9UJZ1 356 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NOCTQ9UK39 431 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MGAT4AQ9UM21 535 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 AURKCQ9UQB9 309 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 STARD10Q9Y365 291 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NDUFAF1Q9Y375 327 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LIPGQ9Y5X9 500 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 JMJD1CQ15652 2540 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TET1Q8NFU7 2136 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 HIVEP3Q5T1R4 2406 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ICE1Q9Y2F5 2266 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ASTN1O14525 1302 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ABCB11O95342 1321 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SPENQ96T58 3664 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 DENND4AQ7Z401 1863 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 A0A0U1RQV5 110 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 C2orf92A0A1B0GVN3 265 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CIB4A0PJX0 185 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 XKRY2A2RUG3 117 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 LINC00862A6NCI5 91 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 METTL21EPA6NDL7 271 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FAM47DPA6NHR8 397 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF729A6NN14 1252 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 A8MXQ7 604 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SHISA9B4DS77 424 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CLDN25C9JDP6 229 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NEDD8-MDP1E9PL57 170 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NPIPA3F8WFD2 350 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 M0QYV0 167 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 M0QZ92 97 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF701M0R085 212 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 WWP2O00308 870 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 AIM2O14862 343 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PGRMC2O15173 223 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CASC3O15234 703 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 AKR7A2O43488 359 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PRKAB2O43741 272 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 GPRIN2O60269 458 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SNAP91O60641 907 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CST8O60676 142 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 GALR3O60755 368 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NOL3O60936 208 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TRIM3O75382 744 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SEC22BO75396 215 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 EIF3GO75821 320 aaKnown RBP eCLIP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 GATBO75879 557 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SLC22A5O76082 557 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms