RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 LRR1Q96L50 414 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 MED29Q9NX70 200 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 DUSP13Q9UII6 198 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 WIPI2Q9Y4P8 454 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 A0A1W2PPW3 197 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 TLDC2A0PJX2 215 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 BCL10O95999 233 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 CRYBB2P43320 205 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 ANXA11P50995 505 aaKnown RBP13.06□□□□□ -0.32
MCF2L-228ENST00000487354 RAB1AP62820 205 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 FOXL1Q12952 345 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 GTDC1Q4AE62 458 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 TMEM255AQ5JRV8 349 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 GKAP1Q5VSY0 366 aaPredicted RBP13.06□□□□□ -0.32
MCF2L-228ENST00000487354 DCAF12L2Q5VW00 463 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 ZNF621Q6ZSS3 439 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 H1FNTQ75WM6 255 aaPredicted RBP13.06□□□□□ -0.32
MCF2L-228ENST00000487354 LRRC17Q8N6Y2 441 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 SIGLECL1Q8N7X8 197 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 EIF1ADQ8N9N8 165 aaKnown RBP13.06□□□□□ -0.32
MCF2L-228ENST00000487354 ANP32BQ92688 251 aaKnown RBP13.06□□□□□ -0.32
MCF2L-228ENST00000487354 TAF15Q92804 592 aaKnown RBP eCLIP13.06□□□□□ -0.32
MCF2L-228ENST00000487354 VPS33AQ96AX1 596 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 TMEM19Q96HH6 336 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 FOXB1Q99853 325 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 C12orf10Q9HB07 376 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 AIG1Q9NVV5 245 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 TAAR3PQ9P1P4 343 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 SLC7A8Q9UHI5 535 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 HAO1Q9UJM8 370 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 ZNF346Q9UL40 294 aaKnown RBP13.06□□□□□ -0.32
MCF2L-228ENST00000487354 NOX1Q9Y5S8 564 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 WNK1Q9H4A3 2382 aa13.06□□□□□ -0.32
MCF2L-228ENST00000487354 A0A0G2JK05 382 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 DNAJC9-AS1A6NH13 148 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 AKAP8O43823 692 aaKnown RBP13.05□□□□□ -0.32
MCF2L-228ENST00000487354 BGLAPP02818 100 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 ANPEPP15144 967 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 ZNF250P15622 560 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 LBPP18428 481 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 CBLP22681 906 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 GTF2E2P29084 291 aaKnown RBP13.05□□□□□ -0.32
MCF2L-228ENST00000487354 CRISP3P54108 245 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 GALK2Q01415 458 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 HNRNPA0Q13151 305 aaKnown RBP13.05□□□□□ -0.32
MCF2L-228ENST00000487354 MIDNQ504T8 468 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 WDR88Q6ZMY6 472 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 DOK3Q7L591 496 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 UEVLDQ8IX04 471 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 SKA3Q8IX90 412 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 RAB39BQ96DA2 213 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 ZNF48Q96MX3 618 aaPredicted RBP13.05□□□□□ -0.32
MCF2L-228ENST00000487354 DUX5Q96PT3 197 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 OR52E6Q96RD3 313 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 NUF2Q9BZD4 464 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 DENND2DQ9H6A0 471 aaPredicted RBP13.05□□□□□ -0.32
MCF2L-228ENST00000487354 UNKLQ9H9P5 680 aaKnown RBP13.05□□□□□ -0.32
MCF2L-228ENST00000487354 MEAF6Q9HAF1 191 aa13.05□□□□□ -0.32
MCF2L-228ENST00000487354 HINT3Q9NQE9 182 aaKnown RBP13.05□□□□□ -0.32
MCF2L-228ENST00000487354 TRAV36DV7A0A075B6V5 113 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 A0A087WUJ7 227 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 A0A1B0GWA3 101 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 UBL3O95164 117 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 RAB36O95755 333 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 SERPINA5P05154 406 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 NUDT7P0C024 238 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 MYZAPP0CAP1 466 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 FAM157BP0CG42 384 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 DSTNP60981 165 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 ABCE1P61221 599 aaKnown RBP13.04□□□□□ -0.32
MCF2L-228ENST00000487354 CAMK2DQ13557 499 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 LARS2Q15031 903 aaKnown RBP13.04□□□□□ -0.32
MCF2L-228ENST00000487354 NKPD1Q17RQ9 610 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 GLIPR1L2Q4G1C9 344 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 RGS7BPQ6MZT1 257 aaPredicted RBP13.04□□□□□ -0.32
MCF2L-228ENST00000487354 LSMEM1Q8N8F7 131 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 DEFB108BQ8NET1 73 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 SLC38A4Q969I6 547 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 SLC35B4Q969S0 331 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 MOGAT1Q96PD6 335 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 C7orf69Q9H7B7 122 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 NTN4Q9HB63 628 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 DDX28Q9NUL7 540 aaKnown RBP13.04□□□□□ -0.32
MCF2L-228ENST00000487354 NKIRAS2Q9NYR9 191 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 CALML5Q9NZT1 146 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 RAP2CQ9Y3L5 183 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 GPR45Q9Y5Y3 372 aa13.04□□□□□ -0.32
MCF2L-228ENST00000487354 IGHV1-69-2A0A0G2JMI3 117 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 LRRN3E7EW58 273 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 SDHDO14521 159 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 OR2T1O43869 369 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 KRT75O95678 551 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 SERPINE1P05121 402 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 CCL2P13500 99 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 PRTN3P24158 256 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 ZFP36P26651 326 aaKnown RBP13.03□□□□□ -0.32
MCF2L-228ENST00000487354 RPL14P50914 215 aaKnown RBP13.03□□□□□ -0.32
MCF2L-228ENST00000487354 MMEL1Q495T6 779 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 KLF17Q5JT82 389 aaPredicted RBP13.03□□□□□ -0.32
MCF2L-228ENST00000487354 USP51Q70EK9 711 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms