RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	PMS2P3	Q13401	168 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	PIN1	Q13526	163 aa	Predicted RBP	13.25	□□□□□ -0.29
VARS-223	ENST00000474643	HMBOX1	Q6NT76	420 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	ZNF544	Q6NX49	715 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	NIPAL3	Q6P499	406 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	H1FNT	Q75WM6	255 aa	Predicted RBP	13.25	□□□□□ -0.29
VARS-223	ENST00000474643	HIST3H2A	Q7L7L0	130 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	CYP4Z1	Q86W10	505 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	KDM8	Q8N371	416 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	ZNF417	Q8TAU3	575 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	HIST1H2AC	Q93077	130 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	TMEM45B	Q96B21	275 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	ZNF587	Q96SQ5	575 aa	Predicted RBP	13.25	□□□□□ -0.29
VARS-223	ENST00000474643	THTPA	Q9BU02	230 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	SLC17A5	Q9NRA2	495 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	SAMD4A	Q9UPU9	718 aa	Known RBP	13.25	□□□□□ -0.29
VARS-223	ENST00000474643	B3GALT5	Q9Y2C3	310 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	CORIN	Q9Y5Q5	1042 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	SNX13	Q9Y5W8	968 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	PMF1-BGLAP	U3KQ54	211 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643		V9GYQ6	96 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	PRR14L	Q5THK1	2151 aa		13.25	□□□□□ -0.29
VARS-223	ENST00000474643	CH25H	O95992	272 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	AHCY	P23526	432 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	NTF4	P34130	210 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	MSX2	P35548	267 aa	Predicted RBP	13.24	□□□□□ -0.29
VARS-223	ENST00000474643	DSCR9	P59020	149 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	ST3GAL3	Q11203	375 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	WDR88	Q6ZMY6	472 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	OR6S1	Q8NH40	331 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	PRRC1	Q96M27	445 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	NSMCE2	Q96MF7	247 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	OXGR1	Q96P68	337 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	ZNF385A	Q96PM9	386 aa	Known RBP	13.24	□□□□□ -0.29
VARS-223	ENST00000474643	ALKBH3	Q96Q83	286 aa	Predicted RBP	13.24	□□□□□ -0.29
VARS-223	ENST00000474643	FNDC11	Q9BVV2	318 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	GRIP2	Q9C0E4	1043 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	YAE1D1	Q9NRH1	226 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	SEC14L4	Q9UDX3	406 aa		13.24	□□□□□ -0.29
VARS-223	ENST00000474643	FAM32A	Q9Y421	112 aa	Known RBP	13.24	□□□□□ -0.29
VARS-223	ENST00000474643	LRRN3	E7EW58	273 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	AKAP8	O43823	692 aa	Known RBP	13.23	□□□□□ -0.29
VARS-223	ENST00000474643	SERPINI2	O75830	405 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	STAMBP	O95630	424 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	MT-ATP6	P00846	226 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	CD8A	P01732	235 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	BGLAP	P02818	100 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	THY1	P04216	161 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	THRB	P10828	461 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	FOXG1	P55316	489 aa	Predicted RBP	13.23	□□□□□ -0.29
VARS-223	ENST00000474643	CLDN17	P56750	224 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	HIKESHI	Q53FT3	197 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	C1QTNF12	Q5T7M4	302 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	LINC00114	Q6XXX2	140 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	CREB3L2	Q70SY1	520 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	TSPYL5	Q86VY4	417 aa	Predicted RBP	13.23	□□□□□ -0.29
VARS-223	ENST00000474643	NKAIN4	Q8IVV8	208 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	UEVLD	Q8IX04	471 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	GPR137C	Q8N3F9	429 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	TMEM239	Q8WW34	195 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	FBXO17	Q96EF6	278 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	MOGAT1	Q96PD6	335 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	RAB3IP	Q96QF0	476 aa	Predicted RBP	13.23	□□□□□ -0.29
VARS-223	ENST00000474643	SLC19A3	Q9BZV2	496 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	TRIM15	Q9C019	465 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	AMBRA1	Q9C0C7	1298 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	OBP2B	Q9NPH6	170 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	NANS	Q9NR45	359 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	RHCG	Q9UBD6	479 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	MOK	Q9UQ07	419 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	FKBP7	Q9Y680	259 aa		13.23	□□□□□ -0.29
VARS-223	ENST00000474643	JMJD1C	Q15652	2540 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	ZAN	Q9Y493	2812 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	FN1	P02751	2386 aa	Known RBP	13.22	□□□□□ -0.29
VARS-223	ENST00000474643	C11orf98	E9PRG8	122 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	ACOT8	O14734	319 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	ARPC2	O15144	300 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	TLX2	O43763	284 aa	Predicted RBP	13.22	□□□□□ -0.29
VARS-223	ENST00000474643	SLC43A1	O75387	559 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	LYPD3	O95274	346 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	CRYAA	P02489	173 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	ADORA3	P0DMS8	318 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	RBM34	P42696	430 aa	Known RBP	13.22	□□□□□ -0.29
VARS-223	ENST00000474643	CAPZA2	P47755	286 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	SELENOP	P49908	381 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	P2RY4	P51582	365 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	SNRPD2	P62316	118 aa	Known RBP	13.22	□□□□□ -0.29
VARS-223	ENST00000474643	LCN8	Q6JVE9	175 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	RRM2B	Q7LG56	351 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	SCAI	Q8N9R8	606 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	OR5J2	Q8NH18	312 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	TMEM255B	Q8WV15	326 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	HTRA1	Q92743	480 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	MOV10	Q9HCE1	1003 aa	Known RBP	13.22	□□□□□ -0.29
VARS-223	ENST00000474643	DCAF13	Q9NV06	445 aa	Known RBP	13.22	□□□□□ -0.29
VARS-223	ENST00000474643	MED31	Q9Y3C7	131 aa		13.22	□□□□□ -0.29
VARS-223	ENST00000474643	CSPG4	Q6UVK1	2322 aa		13.21	□□□□□ -0.29
VARS-223	ENST00000474643	AQP12B	A6NM10	295 aa		13.21	□□□□□ -0.29
VARS-223	ENST00000474643	VSTM5	A8MXK1	200 aa		13.21	□□□□□ -0.29
VARS-223	ENST00000474643	ATP6V1G2-DDX39B	F2Z307	99 aa		13.21	□□□□□ -0.29

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