RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ASIC5Q9NY37 505 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 GIMAP2Q9UG22 337 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 RBBP6Q7Z6E9 1792 aaKnown RBP12.37□□□□□ -0.43
COL6A3-209ENST00000472056 SOWAHBA6NEL2 793 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 DHRS4L2Q6PKH6 230 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 RPS27LQ71UM5 84 aaKnown RBP12.37□□□□□ -0.43
COL6A3-209ENST00000472056 TMPRSS9Q7Z410 1059 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 SEH1LQ96EE3 360 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 APIPQ96GX9 242 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 PCYT2Q99447 389 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 SOX7Q9BT81 388 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 SPNS1Q9H2V7 528 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 NGBQ9NPG2 151 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 SLC9B1P1A6NJY1 282 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 GLB1P16278 677 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 GABRR1P24046 479 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 ADIRFQ15847 76 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 PRR11Q96HE9 360 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-209ENST00000472056 PTGDR2Q9Y5Y4 395 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 CTDSP2O14595 271 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 COCHO43405 550 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 IL2RGP31785 369 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 CDK5Q00535 292 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 OR1Q1Q15612 314 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 PPP1R3BQ86XI6 285 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF680Q8NEM1 530 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 OR14A16Q8NHC5 309 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 SLC35D1Q9NTN3 355 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 KCNK6Q9Y257 313 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 WNK2Q9Y3S1 2297 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 H0Y8G0 127 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 SULT2B1O00204 365 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 DVL1O14640 695 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 SPTA1P02549 2419 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 DVL1P1P54792 670 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-209ENST00000472056 CARD17Q5XLA6 110 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 POM121CA8CG34 1229 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 FAM166BA8MTA8 275 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 M0R3H8 397 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 HIST1H1TP22492 207 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-209ENST00000472056 NRLP54845 237 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 RAC1P63000 192 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 Q6ZRG5 221 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 ZNRF4Q8WWF5 429 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 A0A0B4J2A0 478 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 F5H5K5 113 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF85Q03923 595 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 DOC2BQ14184 412 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 SUMF1Q8NBK3 374 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 OR7D2Q96RA2 312 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 FAM173AQ9BQD7 235 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 SHPKQ9UHJ6 478 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 AKR1C1Q04828 323 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 FPGSQ05932 587 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 FAM69BQ5VUD6 431 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 CADM3Q8N126 398 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 CLEC1AQ8NC01 280 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 OR51I2Q9H344 312 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 SPHK2Q9NRA0 654 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 NDRG2Q9UN36 371 aaKnown RBP12.36□□□□□ -0.43
COL6A3-209ENST00000472056 A0A0J9YY10 115 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 MAN2B1O00754 1011 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 CA12O43570 354 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 LDB2O43679 373 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 PAPLNO95428 1278 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 PSMB6P28072 239 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF93P35789 620 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-209ENST00000472056 CLDN20P56880 219 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 TPPP2P59282 170 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 MR1Q95460 341 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 WDR81Q562E7 1941 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 EIF1BO60739 113 aaKnown RBP12.36□□□□□ -0.43
COL6A3-209ENST00000472056 GDI1P31150 447 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 WASP42768 502 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 SULT1A2P50226 295 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 AADACL3Q5VUY0 350 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 BPHLQ86WA6 291 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-209ENST00000472056 ACOT4Q8N9L9 421 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 FGF7P21781 194 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 MOGAT2Q3SYC2 334 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 RBMXL3Q8N7X1 1067 aaKnown RBP12.36□□□□□ -0.43
COL6A3-209ENST00000472056 DIO2Q92813 273 aa12.36□□□□□ -0.43
COL6A3-209ENST00000472056 OR6C68A6NDL8 312 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF140P52738 457 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF280AP59817 542 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 FBXO27Q8NI29 283 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 GHSRQ92847 366 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 C19orf43Q9BQ61 176 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 ELOVL3Q9HB03 270 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 DUSP22Q9NRW4 184 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SLC23A2Q9UGH3 650 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM184BQ9Y519 407 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 OR8U8P0C7N1 319 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SMIM6P0DI80 62 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM102Q8N9M5 508 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 FAM3DQ96BQ1 224 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 OR5B2Q96R09 309 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 PLAGL1Q9UM63 463 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 BCORQ6W2J9 1755 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 A0A1B0GVG6 124 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms