RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CDH10Q9Y6N8 788 aa13.08□□□□□ -0.32
COL9A3-209ENST00000469852 SPTBN1Q01082 2364 aaKnown RBP13.07□□□□□ -0.32
COL9A3-209ENST00000469852 SOCS2O14508 198 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 PPP1R3DO95685 299 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 IGHMP01871 453 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 RPL4P36578 427 aaKnown RBP13.07□□□□□ -0.32
COL9A3-209ENST00000469852 PPP2R2BQ00005 443 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 CAMK2DQ13557 499 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 SLC36A3Q495N2 470 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 CLEC12AQ5QGZ9 265 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 ARMC4Q5T2S8 1044 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 KDM4DQ6B0I6 523 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 LINGO2Q7L985 606 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 FAM122BQ7Z309 247 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 ZNF100Q8IYN0 542 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 ZNF519Q8TB69 540 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 CA5BP1Q8WTZ4 195 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 ASB10Q8WXI3 467 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 APH1AQ96BI3 265 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 Q96M85 177 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 GPX7Q96SL4 187 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-209ENST00000469852 TXNIPQ9H3M7 391 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 NRIP3Q9NQ35 241 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 SLC7A10Q9NS82 523 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 IL20Q9NYY1 176 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 KIF17Q9P2E2 1029 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 RCE1Q9Y256 329 aa13.07□□□□□ -0.32
COL9A3-209ENST00000469852 HCFC1P51610 2035 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 A0A1W2PRG6 482 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 A8MXE2 369 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 EI24O14681 340 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 IMPA2O14732 288 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 UPK3AO75631 287 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 CLDN14O95500 239 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 BCL10O95999 233 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 CD14P08571 375 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 AGAP20933 346 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 GSTM3P21266 225 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 GRNP28799 593 aaKnown RBP13.06□□□□□ -0.32
COL9A3-209ENST00000469852 RPL27P61353 136 aaKnown RBP13.06□□□□□ -0.32
COL9A3-209ENST00000469852 TFF3Q07654 80 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 MESTQ5EB52 335 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 LPCAT4Q643R3 524 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 XKRXQ6PP77 449 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 CLDN22Q8N7P3 220 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 OR4Q3Q8NH05 313 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 SSC4DQ8WTU2 575 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 RASD2Q96D21 266 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 SLC29A1Q99808 456 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 OSBPL10Q9BXB5 764 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 POLDIP3Q9BY77 421 aaKnown RBP13.06□□□□□ -0.32
COL9A3-209ENST00000469852 PIGMQ9H3S5 423 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 TBC1D23Q9NUY8 699 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 FOXD3Q9UJU5 478 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-209ENST00000469852 RRP15Q9Y3B9 282 aaKnown RBP13.06□□□□□ -0.32
COL9A3-209ENST00000469852 IER3IP1Q9Y5U9 82 aa13.06□□□□□ -0.32
COL9A3-209ENST00000469852 TEX13CA0A0J9YWL9 993 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 NPIPB13A6NJU9 1138 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 NPIPB4C9JG80 1138 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 H0YHG0 523 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 H7C1C5 153 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 BHLHE40O14503 412 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 MSTNO14793 375 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 TRMUO75648 421 aaKnown RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 PGA4P0DJD7 388 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 PGA3P0DJD8 388 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 OSMP13725 252 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 SLC6A6P31641 620 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 ACVR1BP36896 505 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 DAP3P51398 398 aaKnown RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 LCN6P62502 163 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 DBPQ10586 325 aaPredicted RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 COX10Q12887 443 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 SLC25A35Q3KQZ1 300 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 DPY19L2P2Q6ZN68 376 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 CBR4Q8N4T8 237 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 IQCF1Q8N6M8 205 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 OR6X1Q8NH79 312 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 HDAC2Q92769 488 aaKnown RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 ZNF837Q96EG3 531 aaPredicted RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 ALKBH3Q96Q83 286 aaPredicted RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 IFT27Q9BW83 186 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 TSSK6Q9BXA6 273 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 SLCO5A1Q9H2Y9 848 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 DCLRE1BQ9H816 532 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 ZNF556Q9HAH1 456 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 PAPOLBQ9NRJ5 636 aaKnown RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 PARPBPQ9NWS1 579 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 STX18Q9P2W9 335 aaKnown RBP13.05□□□□□ -0.32
COL9A3-209ENST00000469852 TEX15Q9BXT5 2789 aa13.05□□□□□ -0.32
COL9A3-209ENST00000469852 ZNF726A6NNF4 738 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 H3BN98 237 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 C19orf84I3L1E1 186 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 MGRN1O60291 552 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 SLC43A1O75387 559 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 ALPLP05186 524 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 IGFBP5P24593 272 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 POU1F1P28069 291 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 PEX2P28328 305 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 EPHA2P29317 976 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms