RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HLA-DQA2P01906 255 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 IL11P20809 199 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 SNTB2Q13425 540 aaKnown RBP17.29■□□□□ 0.36
VIM-203ENST00000469543 LYPD8Q6UX82 237 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 STAC2Q6ZMT1 411 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 SLC16A9Q7RTY1 509 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 OVCH1Q7RTY7 1134 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 OR5AK2Q8NH90 309 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 DACT3Q96B18 629 aaPredicted RBP17.29■□□□□ 0.36
VIM-203ENST00000469543 ZNF304Q9HCX3 659 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 ZNF222Q9UK12 451 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 FRG2CA6NGY1 282 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 GATBO75879 557 aaKnown RBP17.28■□□□□ 0.36
VIM-203ENST00000469543 HIST1H2ABP04908 130 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 GDNFP39905 211 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 PLCXD2Q0VAA5 305 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 CCDC92Q53HC0 331 aaPredicted RBP17.28■□□□□ 0.36
VIM-203ENST00000469543 LRRN1Q6UXK5 716 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 HIST3H2AQ7L7L0 130 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 MDGA2Q7Z553 956 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 ZNF440Q8IYI8 595 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 SLC43A2Q8N370 569 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 SLC38A9Q8NBW4 561 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 OR52I2Q8NH67 350 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 GPR119Q8TDV5 335 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 HIST1H2ACQ93077 130 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 LRFN5Q96NI6 719 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 PHF7Q9BWX1 381 aaPredicted RBP17.28■□□□□ 0.36
VIM-203ENST00000469543 TBL1XR1Q9BZK7 514 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 GHITMQ9H3K2 345 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 KCNK15Q9H427 330 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 ATXN7L1Q9ULK2 861 aaPredicted RBP17.28■□□□□ 0.36
VIM-203ENST00000469543 TCRBV16S1A1N1A0A5B0 115 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 TSC22D2O75157 780 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 FBXO45P0C2W1 286 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 DPP4P27487 766 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 ZSWIM7Q19AV6 140 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 OGFOD3Q6PK18 319 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 PRSS35Q8N3Z0 413 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 DEDD2Q8WXF8 326 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 PMEPA1Q969W9 287 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 OMA1Q96E52 524 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 SLCO1C1Q9NYB5 712 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 RCE1Q9Y256 329 aa17.28■□□□□ 0.36
VIM-203ENST00000469543 MPZL1O95297 269 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 ABHD16AO95870 558 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 WNT11O96014 354 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 HLA-DOBP13765 273 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 ARHGAP40Q5TG30 622 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 HLA-DQA1Q5Y7H0 255 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 WWTR1Q9GZV5 400 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 MED28Q9H204 178 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 UCK1Q9HA47 277 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 OR5V1Q9UGF6 321 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 V9GY05 133 aa17.27■□□□□ 0.36
VIM-203ENST00000469543 GALK2Q01415 458 aa17.27■□□□□ 0.35
VIM-203ENST00000469543 ALKBH1Q13686 389 aaKnown RBP17.27■□□□□ 0.35
VIM-203ENST00000469543 ELAVL1Q15717 326 aaKnown RBP17.27■□□□□ 0.35
VIM-203ENST00000469543 FAM69BQ5VUD6 431 aa17.27■□□□□ 0.35
VIM-203ENST00000469543 CDC20BQ86Y33 519 aa17.27■□□□□ 0.35
VIM-203ENST00000469543 DPAGT1Q9H3H5 408 aa17.27■□□□□ 0.35
VIM-203ENST00000469543 FGF21Q9NSA1 209 aa17.27■□□□□ 0.35
VIM-203ENST00000469543 GTF2A1LQ9UNN4 478 aa17.27■□□□□ 0.35
VIM-203ENST00000469543 CAMK2AQ9UQM7 478 aa17.27■□□□□ 0.35
VIM-203ENST00000469543 AIPO00170 330 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 C1QBP02746 253 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 ALOX5APP20292 161 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 FBLP22087 321 aaKnown RBP17.26■□□□□ 0.35
VIM-203ENST00000469543 MELKQ14680 651 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 ISXQ2M1V0 245 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 WDFY1Q8IWB7 410 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 OR11H4Q8NGC9 324 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 SYNPRQ8TBG9 265 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 ZFAND1Q8TCF1 268 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 LIPHQ8WWY8 451 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 NSMAFQ92636 917 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 TMEM106AQ96A25 262 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 TSPAN2O60636 221 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 HPXP02790 462 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 ERP29P30040 261 aaKnown RBP17.26■□□□□ 0.35
VIM-203ENST00000469543 DMWDQ09019 674 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 MAB21L1Q13394 359 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 IL10RAQ13651 578 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 CACNA1EQ15878 2313 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 ACKR1Q16570 336 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 ST3GAL2Q16842 350 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 KIF26BQ2KJY2 2108 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 GRPEL2Q8TAA5 225 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 SCMH1Q96GD3 660 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 PTDSS2Q9BVG9 487 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 SEMA4CQ9C0C4 833 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 LAT2Q9GZY6 243 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 TCF7L1Q9HCS4 588 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 FSCN3Q9NQT6 498 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 SLC22A11Q9NSA0 550 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 EPHA6Q9UF33 1036 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 SLC22A13Q9Y226 551 aa17.26■□□□□ 0.35
VIM-203ENST00000469543 GIMD1P0DJR0 217 aa17.25■□□□□ 0.35
VIM-203ENST00000469543 MRPL28Q13084 256 aaKnown RBP17.25■□□□□ 0.35
VIM-203ENST00000469543 KLF9Q13886 244 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms