RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 APH1AQ96BI3 265 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 SLC25A44Q96H78 314 aaPredicted RBP13.46□□□□□ -0.25
NPHP4-205ENST00000466897 LRR1Q96L50 414 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 SAMD8Q96LT4 415 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 RDH12Q96NR8 316 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 OR2M2Q96R28 347 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 GABARAPL3Q9BY60 117 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 POLDIP3Q9BY77 421 aaKnown RBP13.46□□□□□ -0.25
NPHP4-205ENST00000466897 PLA2G12AQ9BZM1 189 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 LINC00470Q9BZP3 86 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 ENKD1Q9H0I2 346 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 TBC1D23Q9NUY8 699 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 MED29Q9NX70 200 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 JKAMPQ9P055 326 aa13.46□□□□□ -0.25
NPHP4-205ENST00000466897 NKX1-2Q9UD57 310 aaPredicted RBP13.46□□□□□ -0.25
NPHP4-205ENST00000466897 SLC35F4A4IF30 521 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 CLEC18AA5D8T8 446 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 WIPF3A6NGB9 483 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 A6NIZ1 184 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 AHCYL1O43865 530 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 SOX14O95416 240 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 CDH2P19022 906 aaPredicted RBP13.45□□□□□ -0.26
NPHP4-205ENST00000466897 PEX2P28328 305 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 RAD23AP54725 363 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 BIDP55957 195 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 RAP1BP61224 184 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 RAP1AP62834 184 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 SIRPAP78324 504 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 SLC36A3Q495N2 470 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 CLEC18BQ6UXF7 455 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 CASP12Q6UXS9 341 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 BTLAQ7Z6A9 289 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 ADCK1Q86TW2 530 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 IGFN1Q86VF2 1251 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 ZNF808Q8N4W9 903 aaPredicted RBP13.45□□□□□ -0.26
NPHP4-205ENST00000466897 ARIH2OSQ8N7S6 290 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 POMGNT2Q8NAT1 580 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 CLEC18CQ8NCF0 446 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 OR2T33Q8NG76 320 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 OR8D4Q8NGM9 314 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 LILRB4Q8NHJ6 448 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 FNDC8Q8TC99 324 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 MAGEE2Q8TD90 523 aaPredicted RBP13.45□□□□□ -0.26
NPHP4-205ENST00000466897 TXNDC15Q96J42 360 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 TSPAN32Q96QS1 320 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 SNX18Q96RF0 628 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 MRPL13Q9BYD1 178 aaKnown RBP13.45□□□□□ -0.26
NPHP4-205ENST00000466897 SLCO5A1Q9H2Y9 848 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 SLC25A19Q9HC21 320 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 GRHPRQ9UBQ7 328 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 MALT1Q9UDY8 824 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 PROCRQ9UNN8 238 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 ORC6Q9Y5N6 252 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 HCFC1P51610 2035 aa13.45□□□□□ -0.26
NPHP4-205ENST00000466897 ZNF726A6NNF4 738 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 H3BN98 237 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 SLC43A1O75387 559 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 SERPINI2O75830 405 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 IGHG1P01857 330 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 PGA4P0DJD7 388 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 PGA3P0DJD8 388 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 NR2C1P13056 603 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 BMP5P22003 454 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 SELENOPP49908 381 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 CRISP1P54107 249 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ERVK-25P63136 954 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 CDK5Q00535 292 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 STK11Q15831 433 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 HIST3H3Q16695 136 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 FBXL19-AS1Q494R0 122 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 SLC27A4Q6P1M0 643 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 NIPAL3Q6P499 406 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 CCDC71Q8IV32 467 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ZNF100Q8IYN0 542 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 RELL2Q8NC24 303 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ITLN2Q8WWU7 325 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ZNF566Q969W8 418 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ZNF570Q96NI8 536 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 SLC29A1Q99808 456 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ALG12Q9BV10 488 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 IFT27Q9BW83 186 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 TSSK6Q9BXA6 273 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 FOXD3Q9UJU5 478 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ZNF346Q9UL40 294 aaKnown RBP13.44□□□□□ -0.26
NPHP4-205ENST00000466897 ADAM18Q9Y3Q7 739 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 HELZ2Q9BYK8 2649 aaKnown RBP13.44□□□□□ -0.26
NPHP4-205ENST00000466897 CACNA1CQ13936 2221 aa13.44□□□□□ -0.26
NPHP4-205ENST00000466897 GCN1Q92616 2671 aaKnown RBP13.44□□□□□ -0.26
NPHP4-205ENST00000466897 A8MXE2 369 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 MITFO75030 526 aaPredicted RBP13.43□□□□□ -0.26
NPHP4-205ENST00000466897 PPP1R3DO95685 299 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 ACADSP16219 412 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 GRK5P34947 590 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 GIPRP48546 466 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 ZNF133P52736 654 aaPredicted RBP13.43□□□□□ -0.26
NPHP4-205ENST00000466897 NPRL3Q12980 569 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 KRR1Q13601 381 aaKnown RBP13.43□□□□□ -0.26
NPHP4-205ENST00000466897 MELKQ14680 651 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 PGGHGQ32M88 737 aa13.43□□□□□ -0.26
NPHP4-205ENST00000466897 CLEC12AQ5QGZ9 265 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms