RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 CAPZA2P47755 286 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 MTNR1BP49286 362 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 GBX2P52951 348 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 DEFA1P59665 94 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 DEFA3P59666 94 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 TRAM1Q15629 374 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 GLYR1Q49A26 553 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 C5orf46Q6UWT4 87 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 C6orf15Q6UXA7 325 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 NDUFAF7Q7L592 441 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 SYS1Q8N2H4 156 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 ZNF417Q8TAU3 575 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 TAAR9Q96RI9 348 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 ZNF587Q96SQ5 575 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 EDEM2Q9BV94 578 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 SDHAF3Q9NRP4 125 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 ZNF318Q5VUA4 2279 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 NSG1A0A0A6YYJ2 146 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 A0A1W2PNU3 283 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-205ENST00000466192 GALR2O43603 387 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-205ENST00000466192 OR2T1O43869 369 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 SPNP16150 400 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 SIRPAP78324 504 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 CDC20Q12834 499 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 CDCP2Q5VXM1 449 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 IL20RBQ6UXL0 311 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 CADM3Q8N126 398 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 ZPBPQ9BS86 351 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 CPNE5Q9HCH3 593 aa16.46■□□□□ 0.23
COL9A3-205ENST00000466192 A0A1W2PQ72 361 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 PLPP3O14495 311 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 ARHGEF9O43307 516 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 EFNA2O43921 213 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 JMJD7P0C870 316 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 TCN2P20062 427 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 PPP3R1P63098 170 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 PLPPR5Q32ZL2 321 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 ACSM3Q53FZ2 586 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 PPP1R32Q7Z5V6 425 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 OR6V1Q8N148 313 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 CT55Q8WUE5 264 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 THAP4Q8WY91 577 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 SMIM19Q96E16 107 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 FBXL2Q9UKC9 423 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 TCFL5Q9UL49 500 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 MOKQ9UQ07 419 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 MED12Q93074 2177 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 TMCC2O75069 709 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 SC5DO75845 299 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 PSMB10P40306 273 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 GDI2P50395 445 aaKnown RBP16.45■□□□□ 0.22
COL9A3-205ENST00000466192 ZNF41P51814 821 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-205ENST00000466192 CDK5R1Q15078 307 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 ACKR1Q16570 336 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 SLC25A53Q5H9E4 307 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 PRAMEF20Q5VT98 475 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 AGAP7PQ5VUJ5 663 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 GDPD3Q7L5L3 318 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 MS4A15Q8N5U1 240 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 WDSUB1Q8N9V3 476 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 OR2M3Q8NG83 312 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 POC1BQ8TC44 478 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 LIN37Q96GY3 246 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-205ENST00000466192 DDA1Q9BW61 102 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 SPRY4Q9C004 299 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 SYT4Q9H2B2 425 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 CDCP1Q9H5V8 836 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 MRPL39Q9NYK5 338 aaKnown RBP16.45■□□□□ 0.22
COL9A3-205ENST00000466192 TBC1D24Q9ULP9 559 aa16.45■□□□□ 0.22
COL9A3-205ENST00000466192 TRBV2A0A0J9YWF9 115 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 C9orf172C9J069 976 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 TP53I11O14683 189 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 OGG1O15527 345 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 SSX4O60224 188 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 RENP00797 406 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 IL7P13232 177 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 CD300CQ08708 224 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 CACNA1CQ13936 2221 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 IDNKQ5T6J7 187 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 XKRXQ6PP77 449 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 PM20D2Q8IYS1 436 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 ZNF519Q8TB69 540 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 AHCTF1Q8WYP5 2266 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 PCSK5Q92824 1860 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 SMAD5Q99717 465 aaKnown RBP16.44■□□□□ 0.22
COL9A3-205ENST00000466192 TMEM9BQ9NQ34 198 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 DOCK10Q96BY6 2186 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 A0A1W2PPK0 400 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 TVP23AA6NH52 213 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 PRR32B1ATL7 298 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 ZNF208O43345 1280 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 OR6A2O95222 327 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 IGHEP01854 428 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 TCEA1P23193 301 aaKnown RBP16.44■□□□□ 0.22
COL9A3-205ENST00000466192 MYL9P24844 172 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 EDNRAP25101 427 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 OTX2P32243 289 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 OR10A3P58181 314 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 RPL27P61353 136 aaKnown RBP16.44■□□□□ 0.22
COL9A3-205ENST00000466192 FOXK1P85037 733 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms