RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 FAM72DQ6L9T8 149 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 NANOGP8Q6NSW7 305 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 CBLN3Q6UW01 205 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 CES3Q6UWW8 571 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 APTXQ7Z2E3 356 aaKnown RBP3.47□□□□□ -1.85
HMGB3-203ENST00000430118 FAM72BQ86X60 149 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 ZDHHC17Q8IUH5 632 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 LACC1Q8IV20 430 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 ZDHHC21Q8IVQ6 265 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 OR4N5Q8IXE1 308 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 CCDC36Q8IYA8 594 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 TMEM161BQ8NDZ6 487 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 OR10V1Q8NGI7 309 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 MCOLN3Q8TDD5 553 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 FAM172AQ8WUF8 416 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 SLCO2A1Q92959 643 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 VOPP1Q96AW1 172 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 SMARCD1Q96GM5 515 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 ATXN7L3BQ96GX2 97 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 PCED1BQ96HM7 432 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 C7orf34Q96L11 122 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 PKMYT1Q99640 499 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 KIFC1Q9BW19 673 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 ROPN1BQ9BZX4 212 aaPredicted RBP3.47□□□□□ -1.85
HMGB3-203ENST00000430118 NMUR1Q9HB89 426 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 C3orf14Q9HBI5 128 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 LPAR2Q9HBW0 351 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 FBXL12Q9NXK8 326 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 STOML2Q9UJZ1 356 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 PTBP2Q9UKA9 531 aaKnown RBP3.47□□□□□ -1.85
HMGB3-203ENST00000430118 RNF6Q9Y252 685 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 CHTOPQ9Y3Y2 248 aaKnown RBP3.47□□□□□ -1.85
HMGB3-203ENST00000430118 LRRK2Q5S007 2527 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 NOTCH2Q04721 2471 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 TRIP11Q15643 1979 aa3.47□□□□□ -1.85
HMGB3-203ENST00000430118 A0A087WW49 117 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 LOC100653049A0A140TA62 436 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ISPDA4D126 451 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ARGFXA6NJG6 315 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SMIM23A6NLE4 172 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 C15orf61A6NNL5 157 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 EFCAB7A8K855 629 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ZNF487B1APH4 448 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 H0YJX3 145 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 L7N2F9 121 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 BMPR1BO00238 502 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 CCRL2O00421 344 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 CLDN5O00501 218 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 TXNDC9O14530 226 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SH2D1BO14796 132 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SIGLEC5O15389 551 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 CFLARO15519 480 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 TNFSF12O43508 249 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SNAP91O60641 907 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SPAG7O75391 227 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 LRCH4O75427 683 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 KRT34O76011 436 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 MYO1DO94832 1006 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 OR4F21O95013 312 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 NTN1O95631 604 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SNAP29O95721 258 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 TNNC2P02585 160 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SLC35G4P0C7Q5 338 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 DRD5P21918 477 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 PAICSP22234 425 aaKnown RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 PBLDP30039 288 aaPredicted RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 MAT2AP31153 395 aaKnown RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SERPINB5P36952 375 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 PPP1R2P41236 205 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 MTIF2P46199 727 aaKnown RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SLC1A6P48664 564 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ACOT2P49753 483 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SLC18A1P54219 525 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 AIF1P55008 147 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ERVFC1-1P60608 527 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 MYL6P60660 151 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ACTR3P61158 418 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 RPS14P62263 151 aaKnown RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 FLI1Q01543 452 aaPredicted RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 NAAAQ02083 359 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 KRTAP1-1Q07627 177 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ARL16Q0P5N6 197 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 IL24Q13007 206 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ZNF177Q13360 481 aaPredicted RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 RFTN1Q14699 578 aaPredicted RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 FASTKD3Q14CZ7 662 aaKnown RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 P2RY14Q15391 338 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 CST6Q15828 149 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 DNAL1Q4LDG9 190 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 FBXO48Q5FWF7 155 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 NCR3LG1Q68D85 454 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 SULT1C3Q6IMI6 304 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 PPP1R2P3Q6NXS1 205 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 WASH2PQ6VEQ5 465 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 CENPUQ71F23 418 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 ZNF767PQ75MW2 155 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 CHMP1BQ7LBR1 199 aa3.46□□□□□ -1.86
HMGB3-203ENST00000430118 TIPARPQ7Z3E1 657 aaKnown RBP3.46□□□□□ -1.86
HMGB3-203ENST00000430118 DHDDSQ86SQ9 333 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms