RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PRORSD1PA6NEY8 169 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 EVPLLA8MZ36 301 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 MS4A18H0YCH9 400 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 M0R3H8 397 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 BGLAPP02818 100 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 OPN1SWP03999 348 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 ALDH3B1P43353 468 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 CSNK1A1P48729 337 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 SLC18A1P54219 525 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 MAD2L1BPQ15013 274 aaPredicted RBP12.52□□□□□ -0.41
SDC1-204ENST00000429035 MS4A18Q3C1V0 323 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 AGKQ53H12 422 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 LRIF1Q5T3J3 769 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 LIPNQ5VXI9 398 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 SNX32Q86XE0 403 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 ARMC8Q8IUR7 673 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 CCDC36Q8IYA8 594 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 SCAIQ8N9R8 606 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 LINC01356Q8N9X3 169 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 SMYD1Q8NB12 490 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 HIPK4Q8NE63 616 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 IL17RDQ8NFM7 739 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 LRRC8CQ8TDW0 803 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 MRPL24Q96A35 216 aaKnown RBP12.52□□□□□ -0.41
SDC1-204ENST00000429035 TLCD1Q96CP7 247 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 RSPO3Q9BXY4 272 aaPredicted RBP12.52□□□□□ -0.41
SDC1-204ENST00000429035 IKZF5Q9H5V7 419 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 CORO2BQ9UQ03 480 aa12.52□□□□□ -0.41
SDC1-204ENST00000429035 TCF21O43680 179 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 LILRA1O75019 489 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 FZD7O75084 574 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 ERLIN1O75477 346 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 SERPINB7O75635 380 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 OR6A2O95222 327 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 TACSTD2P09758 323 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 ADORA3P0DMS8 318 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 NR4A1P22736 598 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 GIFP27352 417 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 LSP1P33241 339 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 THBS2P35442 1172 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 GIPRP48546 466 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 CDH12P55289 794 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 BIDP55957 195 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 MELKQ14680 651 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 MSMPQ1L6U9 139 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 ALKBH6Q3KRA9 238 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 BLOC1S3Q6QNY0 202 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 FUNDC1Q8IVP5 155 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 WDFY1Q8IWB7 410 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 ZNF786Q8N393 782 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 VANGL1Q8TAA9 524 aaPredicted RBP12.51□□□□□ -0.41
SDC1-204ENST00000429035 MCHR1Q99705 422 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 OR51B6Q9H340 312 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 LPAR2Q9HBW0 351 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 SLCO1B3Q9NPD5 702 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 REV1Q9UBZ9 1251 aa12.51□□□□□ -0.41
SDC1-204ENST00000429035 TMEFF2Q9UIK5 374 aaPredicted RBP12.51□□□□□ -0.41
SDC1-204ENST00000429035 CPSF4LA6NMK7 179 aaKnown RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 KPNA4O00629 521 aaPredicted RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 SYNGR3O43761 229 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 UBL3O95164 117 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 ZNF14P17017 642 aaPredicted RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 GPR6P46095 362 aaPredicted RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 IDH3AP50213 366 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 CDH15P55291 814 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 RPS23P62266 143 aaKnown RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 RAB1AP62820 205 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 RAB39AQ14964 217 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 CYP51A1Q16850 503 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 BHLHE22Q8NFJ8 381 aaPredicted RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 OR5J2Q8NH18 312 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 OR6S1Q8NH40 331 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 DYDC1Q8WWB3 177 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 HPS1Q92902 700 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 SLC41A3Q96GZ6 507 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 C1orf159Q96HA4 380 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 C7orf26Q96N11 449 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 WFDC6Q9BQY6 131 aa12.5□□□□□ -0.41
SDC1-204ENST00000429035 CPPED1Q9BRF8 314 aaPredicted RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 MRPL39Q9NYK5 338 aaKnown RBP12.5□□□□□ -0.41
SDC1-204ENST00000429035 LOC102725191A0A1B0GVB3 256 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 PLPP3O14495 311 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 C8BP07358 591 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 IGFBP1P08833 259 aaPredicted RBP12.49□□□□□ -0.41
SDC1-204ENST00000429035 PATE4P0C8F1 98 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 SAGP10523 405 aaPredicted RBP12.49□□□□□ -0.41
SDC1-204ENST00000429035 UMPSP11172 480 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 ITGA2P17301 1181 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 MRPL19P49406 292 aaKnown RBP12.49□□□□□ -0.41
SDC1-204ENST00000429035 SEC24CP53992 1094 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 RIN1Q13671 783 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 DHDDSQ86SQ9 333 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 GLCCI1Q86VQ1 547 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 LRP11Q86VZ4 500 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 ICA1LQ8NDH6 482 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 LRR1Q96L50 414 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 TMEM43Q9BTV4 400 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 CCDC28BQ9BUN5 200 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 OCEL1Q9H607 264 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 TMEM38AQ9H6F2 299 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms