RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 RETREG3Q86VR2 466 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF584Q8IVC4 421 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 ADPRHL1Q8NDY3 354 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF417Q8TAU3 575 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 TAAR8Q969N4 342 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 C1orf147Q96MC9 270 aaPredicted RBP14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 PANX1Q96RD7 426 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF587Q96SQ5 575 aaPredicted RBP14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 GPA33Q99795 319 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 C1QTNF5Q9BXJ0 243 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 C12orf10Q9HB07 376 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF443Q9Y2A4 671 aaPredicted RBP14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 SLC22A23A1A5C7 686 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 DNAJC9-AS1A6NH13 148 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 ARHGAP32A7KAX9 2087 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 CLDN25C9JDP6 229 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 E9PBE3 544 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 CLPTM1O96005 669 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 ZFP36P26651 326 aaKnown RBP14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 LSP1P33241 339 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 RAB39AQ14964 217 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 LARS2Q15031 903 aaKnown RBP14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF621Q6ZSS3 439 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 SERPINA11Q86U17 422 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 SNX32Q86XE0 403 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 LRRC34Q8IZ02 419 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 PNPT1Q8TCS8 783 aaKnown RBP14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 ANP32BQ92688 251 aaKnown RBP14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 RAB1CQ92928 201 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 POP5Q969H6 163 aaKnown RBP14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 SLC35B4Q969S0 331 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 FOXB1Q99853 325 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 EMC6Q9BV81 110 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 SPATA9Q9BWV2 254 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 B3GAT2Q9NPZ5 323 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 SLCO1C1Q9NYB5 712 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 CALML5Q9NZT1 146 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF232Q9UNY5 417 aa14.23□□□□□ -0.13
CHCHD3-202ENST00000423635 CLDN34H7C241 214 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 RNASE1P07998 156 aaKnown RBP14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 HLA-DOBP13765 273 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 B4GALT1P15291 398 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 GRPRP30550 384 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 CDKN2CP42773 168 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 MVDP53602 400 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 CRISP3P54108 245 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 CARD17Q5XLA6 110 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 UEVLDQ8IX04 471 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 SYNPRQ8TBG9 265 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 TCP10LQ8TDR4 215 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 SLC41A3Q96GZ6 507 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 TIMD4Q96H15 378 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 DUX5Q96PT3 197 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 TSPAN32Q96QS1 320 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 ARMC7Q9H6L4 198 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 P2RX2Q9UBL9 471 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 NUP50Q9UKX7 468 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF281Q9Y2X9 895 aa14.22□□□□□ -0.13
CHCHD3-202ENST00000423635 KRT75O95678 551 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 HPRP00739 348 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 KLF3P57682 345 aaPredicted RBP14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 LRRC74AQ0VAA2 488 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 CAMK2DQ13557 499 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 HFEQ30201 348 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 USP51Q70EK9 711 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 PIWIL3Q7Z3Z3 882 aaKnown RBP14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 SKA3Q8IX90 412 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 FGFBP3Q8TAT2 258 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF519Q8TB69 540 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 SLC38A5Q8WUX1 472 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 SNX33Q8WV41 574 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 SLC38A4Q969I6 547 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 TXNDC15Q96J42 360 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 TEX37Q96LM6 180 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 PPP1R36Q96LQ0 422 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 DECR2Q9NUI1 292 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 PLEK2Q9NYT0 353 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF69Q9UC07 566 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 IFT52Q9Y366 437 aa14.21□□□□□ -0.13
CHCHD3-202ENST00000423635 NOTCH1P46531 2555 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 TRAV36DV7A0A075B6V5 113 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 A0A0G2JPF8 293 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 HNRNPCL2B2RXH8 293 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 HNRNPCL3B7ZW38 293 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 HNRNPCL1O60812 293 aaKnown RBP14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 BPGMP07738 259 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 HNRNPCL4P0DMR1 293 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 GCH1P30793 250 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 LCN2P80188 198 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 BAMBIQ13145 260 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 MOGQ16653 247 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 WDFY1Q8IWB7 410 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 LSMEM1Q8N8F7 131 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 DEFB108BQ8NET1 73 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 OR6S1Q8NH40 331 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 UBLCP1Q8WVY7 318 aaPredicted RBP14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 C11orf40Q8WZ69 217 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 C16orf45Q96MC5 204 aaPredicted RBP14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 ULBP2Q9BZM5 246 aa14.2□□□□□ -0.14
CHCHD3-202ENST00000423635 LEF1Q9UJU2 399 aaPredicted RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms