RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 OR1N1Q8NGS0 311 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 DUSP19Q8WTR2 217 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TECTBQ96PL2 329 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 CPNE5Q9HCH3 593 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 C5AR2Q9P296 337 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 USP22Q9UPT9 525 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 BTAF1O14981 1849 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 ANKRD31Q8N7Z5 1873 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 DFFBO76075 338 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TSPAN12O95859 305 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 MT-ATP6P00846 226 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 HSD17B1P14061 328 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 GSCP56915 257 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 ERVPABLB-1P60509 514 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 SELPLGQ14242 412 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TXNRD3NBQ6F5E7 133 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 SLC30A7Q8NEW0 376 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 NIPSNAP3BQ9BS92 247 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 KLF16Q9BXK1 252 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TXNL4BQ9NX01 149 aaKnown RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM59LQ9UK28 342 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 CEPT1Q9Y6K0 416 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 RALGAPA1Q6GYQ0 2036 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TRAV27A0A087WT01 109 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 OR2M5A3KFT3 312 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM189-UBE2V1I3L0A0 370 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 OR2T7P0C7T2 308 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 HLA-DMAP28067 261 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 GPR12P47775 334 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 ID4P47928 161 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 CSNK1EP49674 416 aaKnown RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 UBE2IP63279 158 aaKnown RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 HOXA4Q00056 320 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 PIN1Q13526 163 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM31Q5JXX7 168 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 SLC39A11Q8N1S5 342 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM104Q8NE00 496 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 ERVMER34-1Q9H9K5 563 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 KDM4DQ6B0I6 523 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM207Q6UWW9 146 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 ENDOVQ8N8Q3 282 aaKnown RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM163Q8TC26 289 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 NTMT1Q9BV86 223 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM165Q9HC07 324 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF331Q9NQX6 463 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-204ENST00000423058 LAMP3Q9UQV4 416 aa6.36□□□□□ -1.39
SCN1A-204ENST00000423058 OR7A17O14581 309 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ORM1P02763 201 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 HOXA11P31270 313 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 APOBEC1P41238 236 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 EVX2Q03828 476 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CYS1Q717R9 158 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 FAM173AQ9BQD7 235 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SLC25A18Q9H1K4 315 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR51J1Q9H342 316 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 LANCL2Q9NS86 450 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 MUTYHQ9UIF7 546 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 TIAM2Q8IVF5 1701 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 H3BMQ9 156 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 HSD17B6O14756 317 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 GPRIN2O60269 458 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 DOK2O60496 412 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 NSA2O95478 260 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OPN1LWP04000 364 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ELAVL4P26378 380 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 LAP3P28838 519 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ERV3-1Q14264 604 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 RPE65Q16518 533 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PCK2Q16822 640 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 MORN1Q5T089 497 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PLXDC2Q6UX71 529 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 GFRALQ6UXV0 394 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ANKRD13BQ86YJ7 626 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CDH26Q8IXH8 852 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 BPIFB2Q8N4F0 458 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 DRAXINQ8NBI3 349 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR2T35Q8NGX2 323 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 DEDD2Q8WXF8 326 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 HSD17B8Q92506 261 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 C20orf85Q9H1P6 137 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 IL37Q9NZH6 218 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 MYO7AQ13402 2215 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SLX4Q8IY92 1834 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 TRGV8A0A0C4DH27 118 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 M0R1B8 84 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SDHDO14521 159 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CD27P26842 260 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PPIAP62937 165 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 NTHL1P78549 312 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CTBSQ01459 385 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 TIGITQ495A1 244 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CLLU1OSQ5K130 101 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 IER5LQ5T953 404 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ENTHD1Q8IYW4 607 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR13C8Q8NGS7 320 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR13J1Q8NGT2 312 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR2T6Q8NHC8 308 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SMAP2Q8WU79 429 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 C3orf49Q96BT1 292 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 NLKQ9UBE8 527 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms