RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 MELKQ14680 651 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 RAB39AQ14964 217 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 NPTX1Q15818 432 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 GSG1Q2KHT4 349 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ALKBH6Q3KRA9 238 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 DLEU7Q6UYE1 221 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 WDR88Q6ZMY6 472 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 NET1Q7Z628 596 aaPredicted RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 TSPYL5Q86VY4 417 aaPredicted RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 PTOV1Q86YD1 416 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ARMC8Q8IUR7 673 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ANKK1Q8NFD2 765 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 GPR32P1Q8NGA4 272 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 OR4D11Q8NGI4 311 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 VANGL1Q8TAA9 524 aaPredicted RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 LRRC8CQ8TDW0 803 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 UBASH3BQ8TF42 649 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 C7orf26Q96N11 449 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ZNF75AQ96N20 296 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ANKRD27Q96NW4 1050 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 MCHR1Q99705 422 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 SPATA5L1Q9BVQ7 753 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ULBP2Q9BZM5 246 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 MYOZ1Q9NP98 299 aaPredicted RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 TESQ9UGI8 421 aaKnown RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 SLC13A4Q9UKG4 626 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 USP22Q9UPT9 525 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 CMAHPQ9Y471 501 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 LOC102725191A0A1B0GVB3 256 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ZNF726A6NNF4 738 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 KPNA4O00629 521 aaPredicted RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 AKAP8O43823 692 aaKnown RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 MFN2O95140 757 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 THY1P04216 161 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ADORA3P0DMS8 318 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ZNF14P17017 642 aaPredicted RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 GPX2P18283 190 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 GIPRP48546 466 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 MRPL19P49406 292 aaKnown RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 MTPNP58546 118 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 PUDPQ08623 228 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 DUSP7Q16829 419 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 FAM91A1Q658Y4 838 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 C5orf46Q6UWT4 87 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 LRRC17Q8N6Y2 441 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 ADPRHL1Q8NDY3 354 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 HIPK4Q8NE63 616 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 NEU4Q8WWR8 484 aaPredicted RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 ZNF607Q96SK3 696 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 EPYCQ99645 322 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 FOXB1Q99853 325 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 CCDC28BQ9BUN5 200 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 OR51B6Q9H340 312 aa9.97□□□□□ -0.81
USP4-204ENST00000416417 MRPL39Q9NYK5 338 aaKnown RBP9.97□□□□□ -0.81
USP4-204ENST00000416417 PRORSD1PA6NEY8 169 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 VSTM5A8MXK1 200 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 EVPLLA8MZ36 301 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 WNT9BO14905 357 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 LYPD3O95274 346 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 TGDSO95455 350 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 CH25HO95992 272 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 HPXP02790 462 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 CCL2P13500 99 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 ZNF35P13682 527 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 HNF1AP20823 631 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 PPIBP23284 216 aaKnown RBP9.96□□□□□ -0.82
USP4-204ENST00000416417 PAX7P23759 505 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 COL8A2P25067 703 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 GIFP27352 417 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 CHN2P52757 468 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 RAB1AP62820 205 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 RIN1Q13671 783 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 RUNDC3AQ59EK9 446 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 ELFN2Q5R3F8 820 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 RINLQ6ZS11 566 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 RETREG3Q86VR2 466 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 RANBP3LQ86VV4 465 aaPredicted RBP9.96□□□□□ -0.82
USP4-204ENST00000416417 SKA3Q8IX90 412 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 ZNF786Q8N393 782 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 OR6T1Q8NGN1 323 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 MRPL24Q96A35 216 aaKnown RBP9.96□□□□□ -0.82
USP4-204ENST00000416417 ARHGDIGQ99819 225 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 SH3GL3Q99963 347 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 TMEM38AQ9H6F2 299 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 LPAR2Q9HBW0 351 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 B3GAT2Q9NPZ5 323 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 REV1Q9UBZ9 1251 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 ANGPT4Q9Y264 503 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 CORINQ9Y5Q5 1042 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 NOX1Q9Y5S8 564 aa9.96□□□□□ -0.82
USP4-204ENST00000416417 M0QX08 132 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 SERPINB7O75635 380 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 ERCC1P07992 297 aaPredicted RBP9.95□□□□□ -0.82
USP4-204ENST00000416417 TACSTD2P09758 323 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 CSNK1A1P48729 337 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 SQLEQ14534 574 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 CYP51A1Q16850 503 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 TRMT5Q32P41 509 aaKnown RBP9.95□□□□□ -0.82
USP4-204ENST00000416417 TTMPQ5BVD1 217 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 ENTPD8Q5MY95 495 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms