RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ABHD3Q8WU67 409 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 PTP4A1Q93096 173 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 TMEM45BQ96B21 275 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 RASD2Q96D21 266 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 PLEKHA8Q96JA3 519 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 IL4I1Q96RQ9 567 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 MRPL13Q9BYD1 178 aaKnown RBP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 PRRG4Q9BZD6 226 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 NMNAT2Q9BZQ4 307 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 GLRX2Q9NS18 164 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 VSX1Q9NZR4 365 aaPredicted RBP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 EMC3Q9P0I2 261 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 RCE1Q9Y256 329 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 FLVCR1Q9Y5Y0 555 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 PRSS37A4D1T9 235 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 SH3D21A4FU49 640 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 KDM4EB2RXH2 506 aaPredicted RBP12.67□□□□□ -0.38
SF3B1-204ENST00000414963 M0R129 80 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 M0R3G1 203 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 XKRYO14609 159 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 ZNHIT1O43257 154 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 WBP4O75554 376 aaKnown RBP12.67□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF432O94892 652 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 YES1P07947 543 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 ACVR2AP27037 513 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 SLC25A1P53007 311 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 BIDP55957 195 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 CXCR4P61073 352 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 CSNK2BP67870 215 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 TOP3AQ13472 1001 aaPredicted RBP12.67□□□□□ -0.38
SF3B1-204ENST00000414963 CRMP1Q14194 572 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 LAIR2Q6ISS4 152 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 KRT80Q6KB66 452 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 SLC37A3Q8NCC5 494 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 APH1BQ8WW43 257 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 SLC25A44Q96H78 314 aaPredicted RBP12.67□□□□□ -0.38
SF3B1-204ENST00000414963 Q96MT0 163 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 KCNK17Q96T54 332 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 ALG12Q9BV10 488 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 RASSF1Q9NS23 344 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 CLN6Q9NWW5 311 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 MED29Q9NX70 200 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 PCDHGB5Q9Y5G0 923 aa12.67□□□□□ -0.38
SF3B1-204ENST00000414963 SLC22A23A1A5C7 686 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 SLC35F4A4IF30 521 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 OR6C68A6NDL8 312 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 FIGNL2A6NMB9 653 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF726A6NNF4 738 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 AKAP8O43823 692 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 TRMUO75648 421 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 SERPINI2O75830 405 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 ABOP16442 354 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 PAICSP22234 425 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 MLLT10P55197 1068 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 CLDN17P56750 224 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 RBPJQ06330 500 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 RUNX1T1Q06455 604 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 GUSBP1Q15486 140 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 HIST3H3Q16695 136 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 C6orf141Q5SZD1 244 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 EEF1A1P5Q5VTE0 462 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 NXNL2Q5VZ03 156 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 RTL6Q6ICC9 239 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF585AQ6P3V2 769 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 UGT2A3Q6UWM9 527 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 CXXC5Q7LFL8 322 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 JAZF1Q86VZ6 243 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 CPOQ8IVL8 374 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 WDFY1Q8IWB7 410 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 TMEM123Q8N131 208 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 ST6GALNAC3Q8NDV1 305 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 FNDC8Q8TC99 324 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 CPT1CQ8TCG5 803 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 HDAC2Q92769 488 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 INTS12Q96CB8 462 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 NMD3Q96D46 503 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 GMPPAQ96IJ6 420 aaPredicted RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 LRR1Q96L50 414 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF385AQ96PM9 386 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 OR2M2Q96R28 347 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 TRIB1Q96RU8 372 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 NMNAT3Q96T66 252 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 TM9SF2Q99805 663 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 YTHDF1Q9BYJ9 559 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 HINT3Q9NQE9 182 aaKnown RBP12.66□□□□□ -0.38
SF3B1-204ENST00000414963 PLCXD1Q9NUJ7 323 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 PARPBPQ9NWS1 579 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 GPR52Q9Y2T5 361 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 IGSF10Q6WRI0 2623 aa12.66□□□□□ -0.38
SF3B1-204ENST00000414963 MBD3L4A6NDZ8 208 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 MBD3L3A6NE82 208 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 MBD3L5A6NJ08 208 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 PRR23D1E9PI22 279 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 PRRG2O14669 202 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 ARHGEF9O43307 516 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 SLC19A2O60779 497 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 SS18L1O75177 396 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-204ENST00000414963 ENTPD6O75354 484 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 RENP00797 406 aa12.65□□□□□ -0.38
SF3B1-204ENST00000414963 IGHG1P01857 330 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms