RNA–Protein interactions for RNA: ENST00000414632.5

VPS41-205, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-205ENST00000414632 KLHL15Q96M94 604 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 ANKRD27Q96NW4 1050 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 OR5B2Q96R09 309 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 CGREF1Q99674 301 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 RSPO3Q9BXY4 272 aaPredicted RBP4.34□□□□□ -1.71
VPS41-205ENST00000414632 SRXN1Q9BYN0 137 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 OR11A1Q9GZK7 315 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 OPN3Q9H1Y3 402 aaPredicted RBP4.34□□□□□ -1.71
VPS41-205ENST00000414632 RAD21L1Q9H4I0 556 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 COQ10BQ9H8M1 238 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 MTHFD2LQ9H903 347 aaPredicted RBP4.34□□□□□ -1.71
VPS41-205ENST00000414632 CALHM2Q9HA72 323 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 A4GALTQ9NPC4 353 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 CTPS2Q9NRF8 586 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 POLE3Q9NRF9 147 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 TBCCD1Q9NVR7 557 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 DKK2Q9UBU2 259 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 SLC25A10Q9UBX3 287 aaPredicted RBP4.34□□□□□ -1.71
VPS41-205ENST00000414632 SLC35A3Q9Y2D2 325 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 KLF2Q9Y5W3 355 aaPredicted RBP4.34□□□□□ -1.71
VPS41-205ENST00000414632 CAPN7Q9Y6W3 813 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 DSPPQ9NZW4 1301 aa4.34□□□□□ -1.71
VPS41-205ENST00000414632 PKDREJQ9NTG1 2253 aa4.34□□□□□ -1.72
VPS41-205ENST00000414632 TMED7-TICAM2A0A0A6YYA0 188 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 A0A0G2JPF8 293 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 TMEM72A0PK05 275 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 CFAP73A6NFT4 308 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 FAM90A7PA6NKC0 464 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 CCT8L1PA6NM43 557 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 FAM90A22PA8MWA6 464 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 FAM90A12PA8MX19 464 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 FAM90A23PA8MXZ1 464 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 VWC2LB2RUY7 222 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 HNRNPCL2B2RXH8 293 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 HNRNPCL3B7ZW38 293 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 FXYD1O00168 92 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 AIM2O14862 343 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 AHCYL1O43865 530 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 TPST1O60507 370 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 HNRNPCL1O60812 293 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 TNFSF13O75888 250 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 RCBTB2O95199 551 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 PGM3O95394 542 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 SYNGR4O95473 234 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 PLGP00747 810 aaPredicted RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 PABPC4LP0CB38 370 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 HNRNPCL4P0DMR1 293 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 COX4I1P13073 169 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 GPX2P18283 190 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 PPIBP23284 216 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 TACR3P29371 465 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 OPRM1P35372 400 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 TIMP3P35625 211 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 EIF1P41567 113 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 CPA2P48052 419 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 ASCL1P50553 236 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 CDH15P55291 814 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 CARD18P57730 90 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 EEFSECP57772 596 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 KRTAP10-9P60411 292 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 SUMO2P61956 95 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 EPS8Q12929 822 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 BNIP2Q12982 314 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 MYBPHQ13203 477 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 SELENBP1Q13228 472 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 CYLC2Q14093 348 aaPredicted RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 GNA13Q14344 377 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 LARS2Q15031 903 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 SF3B4Q15427 424 aaKnown RBP eCLIP4.33□□□□□ -1.726e-8■□□□□ 10.4
VPS41-205ENST00000414632 TBCEQ15813 527 aaPredicted RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 BCL2A1Q16548 175 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 EXOC3L2Q2M3D2 409 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 TRMT5Q32P41 509 aaKnown RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 SLC25A35Q3KQZ1 300 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 LIN52Q52LA3 116 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 METTL21CQ5VZV1 264 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 NANOGP8Q6NSW7 305 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 REEP3Q6NUK4 255 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 C3orf33Q6P1S2 294 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 PTCHD4Q6ZW05 846 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 PTOV1Q86YD1 416 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 LNX2Q8N448 690 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 DPP10Q8N608 796 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 OR10A6Q8NH74 314 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 VANGL1Q8TAA9 524 aaPredicted RBP4.33□□□□□ -1.72
VPS41-205ENST00000414632 BBS10Q8TAM1 723 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 LINC01560Q8TB33 94 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 ABHD3Q8WU67 409 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 GLMPQ8WWB7 406 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 TMEM234Q8WY98 164 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 ST8SIA1Q92185 356 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 OSTF1Q92882 214 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 LRRC58Q96CX6 371 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 STARD4Q96DR4 205 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 ARL5BQ96KC2 179 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 WFDC6Q9BQY6 131 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 ALG8Q9BVK2 526 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 ELOVL1Q9BW60 279 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 CCDC106Q9BWC9 280 aa4.33□□□□□ -1.72
VPS41-205ENST00000414632 NSRP1Q9H0G5 558 aaKnown RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms