RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ZNF836Q6ZNA1 936 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF621Q6ZSS3 439 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 LINC00336Q6ZUF6 198 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 OR4N5Q8IXE1 308 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 PGBD5Q8N414 524 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF843Q8N446 348 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 C15orf54Q8N8G6 183 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 CDRT4Q8N9R6 151 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF383Q8NA42 475 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 DTD1Q8TEA8 209 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 BAALCQ8WXS3 180 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 CCDC126Q96EE4 140 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 NSL1Q96IY1 281 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 RNF2Q99496 336 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 SLC25A33Q9BSK2 321 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 PAPOLGQ9BWT3 736 aaKnown RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 RAB34Q9BZG1 259 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ACTR3CQ9C0K3 210 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 RBM38Q9H0Z9 239 aaKnown RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 PLAC1Q9HBJ0 212 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 BATF3Q9NR55 127 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 C3orf18Q9UK00 162 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 SAR1BQ9Y6B6 198 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 UBN2Q6ZU65 1347 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ADGRA3Q8IWK6 1321 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 PREX1Q8TCU6 1659 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 METP08581 1390 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 JCADQ9P266 1359 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 FUOMA2VDF0 154 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ASPDHA6ND91 283 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 BLOC1S5-TXNDC5H3BN57 136 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 H3BN98 237 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SLC1A7O00341 560 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACOT8O14734 319 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PRMT5O14744 637 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ATP6V0E1O15342 81 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RGS14O43566 566 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CXCL13O43927 109 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PCDH7O60245 1069 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PSIP1O75475 530 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SNAPINO95295 136 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CD160O95971 181 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ATP1A1P05023 1023 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 KRT16P08779 473 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CTXN2P0C2S0 81 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR4E1P0C645 316 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 MGMTP16455 207 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CRABP2P29373 138 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 MAGEA6P43360 314 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 XCR1P46094 333 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR3A2P47893 321 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 AP3S2P59780 193 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACTBP60709 375 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ABCE1P61221 599 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ERVK11-1P61568 191 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACTA2P62736 377 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RPL10AP62906 217 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACTG1P63261 375 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACTG2P63267 376 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACTC1P68032 377 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACTA1P68133 377 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 MRPS22P82650 360 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 LAGE3Q14657 143 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 DGUOKQ16854 277 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ODF3L2Q3SX64 289 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 UNC50Q53HI1 259 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OTUD1Q5VV17 481 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ADNP2Q6IQ32 1131 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 APOBEC3HQ6NTF7 200 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CERS6Q6ZMG9 384 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ADAMTSL5Q6ZMM2 481 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 C3P1Q6ZMU1 363 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 Q6ZTC4 211 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 TIPARPQ7Z3E1 657 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 TAC4Q86UU9 113 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CMTM1Q8IZ96 169 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 APOBEC4Q8WW27 367 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 DNAJB3Q8WWF6 145 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RPEQ96AT9 228 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 BIRC7Q96CA5 298 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 TAAR1Q96RJ0 339 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 HSD17B14Q9BPX1 270 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 APOL2Q9BQE5 337 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF670Q9BS34 389 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 UPF3AQ9H1J1 476 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 DEFB129Q9H1M3 183 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SYT4Q9H2B2 425 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PIGUQ9H490 435 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 NXF3Q9H4D5 531 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 Q9HAA7 133 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 FGF20Q9NP95 211 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ABCB10Q9NRK6 738 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RMND1Q9NWS8 449 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF282Q9UDV7 671 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 LSM7Q9UK45 103 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 MRPS28Q9Y2Q9 187 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 YARS2Q9Y2Z4 477 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 V9GYY9 64 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 EFCAB5A4FU69 1503 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ZFYVE16Q7Z3T8 1539 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms