RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 KCNE5Q9UJ90 142 aa4.89□□□□□ -1.63
VPS41-203ENST00000395969 NXT1Q9UKK6 140 aaKnown RBP4.89□□□□□ -1.63
VPS41-203ENST00000395969 MRPS2Q9Y399 296 aaKnown RBP4.89□□□□□ -1.63
VPS41-203ENST00000395969 MRPS18CQ9Y3D5 142 aaKnown RBP4.89□□□□□ -1.63
VPS41-203ENST00000395969 TRBV4-1A0A0J9YWV2 114 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 A0A1B0GX78 115 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 C5orf58C9J3I9 102 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 MCRIP1C9JLW8 97 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ZNF593O00488 134 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 GABRPO00591 440 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 HPP00738 406 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 HPXP02790 462 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 IGFBP1P08833 259 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 RAB40ALP0C0E4 278 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 CSF2RBP32927 897 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 THBS2P35442 1172 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 PITPNBP48739 271 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SRP9P49458 86 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 SLC25A1P53007 311 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 PNLIPRP2P54317 469 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 TSPAN5P62079 268 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ACY1Q03154 408 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 TFF2Q03403 129 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 TSC22D1Q15714 1073 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SLC35D3Q5M8T2 416 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 VASNQ6EMK4 673 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 PODNL1Q6PEZ8 512 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 RANBP3LQ86VV4 465 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 GPR135Q8IZ08 494 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 DMBX1Q8NFW5 382 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 OR6T1Q8NGN1 323 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 PTPMT1Q8WUK0 201 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 CNOT9Q92600 299 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 EXOSC8Q96B26 276 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 OTULINQ96BN8 352 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 FBXO17Q96EF6 278 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 CMTM3Q96MX0 182 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ZNF582Q96NG8 517 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 CDC6Q99741 560 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 C7orf50Q9BRJ6 194 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 ZPBPQ9BS86 351 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 MS4A5Q9H3V2 200 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SEC14L3Q9UDX4 400 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 IL20RAQ9UHF4 553 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ACSL6Q9UKU0 697 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 CLCA2Q9UQC9 943 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 A0A1W2PPH5 198 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ANXA2P2A6NMY6 339 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 H7C2Y5 167 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SAP18O00422 153 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 CLDN4O14493 209 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SURF4O15260 269 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 NPIPB7O75200 414 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SIX6O95475 246 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 EIF4EP06730 217 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 FABP1P07148 127 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 CTSEP14091 401 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 FOSL2P15408 326 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 NPR2P20594 1047 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 MMP11P24347 488 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 GIFP27352 417 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 HTR1FP30939 366 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ZNF133P52736 654 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 CAPZA1P52907 286 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 PDX1P52945 283 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ERVK-25P63136 954 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SHC2P98077 582 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ZP4Q12836 540 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 POU4F2Q12837 409 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 GANABQ14697 944 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 HLXQ14774 488 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 PAN3Q58A45 887 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 C9orf152Q5JTZ5 239 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 HBMQ6B0K9 141 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ARMC6Q6NXE6 501 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 H3F3CQ6NXT2 135 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 MRPL14Q6P1L8 145 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 CASP12Q6UXS9 341 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 NPSR1Q6W5P4 371 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 GDF7Q7Z4P5 450 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 SPICQ8N5J4 248 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 TCEANCQ8N8B7 351 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 EXD3Q8N9H8 876 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 OR56B4Q8NH76 319 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 NEIL3Q8TAT5 605 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 GATAD2BQ8WXI9 593 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 PHYHIPQ92561 330 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 KLK6Q92876 244 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 KCTD12Q96CX2 325 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 LRRC46Q96FV0 321 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 ABHD1Q96SE0 405 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 NRTNQ99748 197 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 WDR77Q9BQA1 342 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 NKX6-2Q9C056 277 aaPredicted RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 DNTTIP1Q9H147 329 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 NIT2Q9NQR4 276 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 KLHL28Q9NXS3 571 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 MRTO4Q9UKD2 239 aaKnown RBP4.88□□□□□ -1.63
VPS41-203ENST00000395969 CA5BQ9Y2D0 317 aa4.88□□□□□ -1.63
VPS41-203ENST00000395969 EXOSC1Q9Y3B2 195 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms