RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TMEM71Q6P5X7 295 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CD300LGQ6UXG3 332 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 IL34Q6ZMJ4 242 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF765Q7L2R6 523 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 TIPARPQ7Z3E1 657 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 SYT9Q86SS6 491 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 LRRTM1Q86UE6 522 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 RNF113BQ8IZP6 322 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 TANKQ92844 425 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 NKX3-1Q99801 234 aaPredicted RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ULBP3Q9BZM4 244 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 AKIP1Q9NQ31 210 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 C17orf105B2RV13 164 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 SGK494L7N484 410 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 JTBO76095 146 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 OPN1LWP04000 364 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 TACR1P25103 407 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 PDE7AQ13946 482 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 WBP2NLQ6ICG8 309 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 MAMDC4Q6UXC1 1216 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 TMEM151BQ8IW70 566 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 LMNTD1Q8N9Z9 388 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 AMBRA1Q9C0C7 1298 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ANKRD26Q9UPS8 1709 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 OR5K4A6NMS3 321 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 SLC31A2O15432 143 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 HNF1AP20823 631 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF542PQ5EBM4 170 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 COX20Q5RI15 118 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 OR52N1Q8NH53 320 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 DNAJB11Q9UBS4 358 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 RFPL4AA6NLU0 287 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 RFPL4AL1F8VTS6 287 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF140P52738 457 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-202ENST00000394243 LTC4SQ16873 150 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 PRICKLE2Q7Z3G6 844 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 WDR5BQ86VZ2 330 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF761Q86XN6 746 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-202ENST00000394243 FUNDC1Q8IVP5 155 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 CLEC1AQ8NC01 280 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 PPP1R35Q8TAP8 253 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 NANOS1Q8WY41 292 aaKnown RBP10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZFYVE21Q9BQ24 234 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF840PA6NDX5 716 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF354AO60765 605 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ITGB7P26010 798 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 CCR7P32248 378 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 EEF1A1P68104 462 aaKnown RBP10.98□□□□□ -0.65
SYNPO-202ENST00000394243 CRMP1Q14194 572 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 COMMD1Q8N668 190 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 CHST14Q8NCH0 376 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 KCNG3Q8TAE7 436 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 PCYT2Q99447 389 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 PTDSS2Q9BVG9 487 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ARNT2Q9HBZ2 717 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 MTCH1Q9NZJ7 389 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 EMC9Q9Y3B6 208 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 PRPH2P23942 346 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 OR8G2PQ6IF36 304 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF620Q6ZNG0 422 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF610Q8N9Z0 462 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 HSD17B8Q92506 261 aa10.98□□□□□ -0.65
SYNPO-202ENST00000394243 TUBAL3A6NHL2 446 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF727A8MUV8 499 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SULT2B1O00204 365 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 TAAR5O14804 337 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 APBB3O95704 486 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 P04436 131 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 ACSM4P0C7M7 580 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 FABP4P15090 132 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 RPA2P15927 270 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 EPHA5P54756 1037 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 KRTDAPP60985 99 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SNRPGP62308 76 aaKnown RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 FKBP1BP68106 108 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 TCTE3Q8IZS6 198 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 OR10D4PQ8NGN7 298 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 NMNAT3Q96T66 252 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 NUDT22Q9BRQ3 303 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 PRO1933Q9H354 126 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 GPR55Q9Y2T6 319 aaPredicted RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 A0A087WV62 115 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 F6UZH7 168 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 G3V3Q6 166 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 TMX2-CTNND1H3BSU7 103 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 DVL1O14640 695 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CPEP16870 476 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 HNRNPA2B1P22626 353 aaKnown RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 DVL1P1P54792 670 aaPredicted RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 BIDP55957 195 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CPXM2Q8N436 756 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 LRRC18Q8N456 261 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 BPIFCQ8NFQ6 507 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CCDC74AQ96AQ1 378 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SYT11Q9BT88 431 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 C11orf84Q9BUA3 381 aaPredicted RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 KLHL42Q9P2K6 505 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 OR10J4P0C629 311 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SNRPEP62304 92 aaKnown RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 FOXK2Q01167 660 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms