RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DUSP15Q9H1R2 295 aaPredicted RBP12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF304Q9HCX3 659 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF281Q9Y2X9 895 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 C2orf72A6NCS6 295 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 GATBO75879 557 aaKnown RBP12.11□□□□□ -0.47
CCDC3-202ENST00000378839 PLGP00747 810 aaPredicted RBP12.11□□□□□ -0.47
CCDC3-202ENST00000378839 PTHLHP12272 177 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 CCR6P51684 374 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 BCL2L15Q5TBC7 163 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 SERPINA12Q8IW75 414 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 DNAAF1Q8NEP3 725 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 CREB3L1Q96BA8 519 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF501Q96CX3 271 aaPredicted RBP12.11□□□□□ -0.47
CCDC3-202ENST00000378839 GRHPRQ9UBQ7 328 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 MKL2Q9ULH7 1088 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 HRH3Q9Y5N1 445 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 C11orf98E9PRG8 122 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 APEHP13798 732 aaKnown RBP12.11□□□□□ -0.47
CCDC3-202ENST00000378839 IL11P20809 199 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 RRAS2P62070 204 aaPredicted RBP12.11□□□□□ -0.47
CCDC3-202ENST00000378839 NTRK2Q16620 822 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 YIF1BQ5BJH7 314 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 LAMTOR1Q6IAA8 161 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 PRSS35Q8N3Z0 413 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 SLC41A2Q96JW4 573 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 MFRPQ9BY79 579 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 MRPL15Q9P015 296 aaKnown RBP12.11□□□□□ -0.47
CCDC3-202ENST00000378839 ABRACLQ9P1F3 81 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 SPATA2Q9UM82 520 aa12.11□□□□□ -0.47
CCDC3-202ENST00000378839 A0A1W2PQ72 361 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 FAM172BPA6NC97 362 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 AKR7A2O43488 359 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ARL6IP5O75915 188 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 WNT11O96014 354 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 FBLP22087 321 aaKnown RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ITPKBP27987 946 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 CAPZA2P47755 286 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 MMP15P51511 669 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 DPY19L4Q7Z388 723 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ADAD1Q96M93 576 aaKnown RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 CCNL2Q96S94 520 aaPredicted RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ULBP3Q9BZM4 244 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 NUDT15Q9NV35 164 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 IFITM5A6NNB3 132 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 NUDT21O43809 227 aaKnown RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 SCO2O43819 266 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 UBL3O95164 117 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 TIAF1O95411 115 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 SOX2P48431 317 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 GALK2Q01415 458 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 SMAD2Q15796 467 aaKnown RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ETFDHQ16134 617 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ODF4Q2M2E3 257 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 OR5M10Q6IEU7 315 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF574Q6ZN55 896 aaPredicted RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF433Q8N7K0 673 aaPredicted RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 OR1N1Q8NGS0 311 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 PPP1R14AQ96A00 147 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 OR11A1Q9GZK7 315 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 SYNDIG1Q9H7V2 258 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 SLCO1C1Q9NYB5 712 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 SEMA5BQ9P283 1151 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 TRAV8-7A0A075B6U6 113 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ALG1L2C9J202 215 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 H0YC42 278 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ERVH48-1M5A8F1 160 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ARHGEF9O43307 516 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ORC5O43913 435 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 MT-ND4P03905 459 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 GIFP27352 417 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 IL12BP29460 328 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 PLCXD2Q0VAA5 305 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 KLF9Q13886 244 aaPredicted RBP12.1□□□□□ -0.47
CCDC3-202ENST00000378839 EEF1A1P5Q5VTE0 462 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 ADGRG3Q86Y34 549 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 SLC25A36Q96CQ1 311 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 KCNG2Q9UJ96 466 aa12.1□□□□□ -0.47
CCDC3-202ENST00000378839 WDR87Q6ZQQ6 2873 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 CPAMD8Q8IZJ3 1885 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 TO15178 435 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 FADS1O60427 444 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 TMIGD3P0DMS9 266 aaPredicted RBP12.09□□□□□ -0.47
CCDC3-202ENST00000378839 ALOX5APP20292 161 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 HSF2Q03933 536 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 FAPQ12884 760 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 BIKQ13323 160 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 FCN2Q15485 313 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 ARHGAP40Q5TG30 622 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 PXDC1Q5TGL8 231 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 FCRLAQ7L513 359 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 OR11H7Q8NGC8 314 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 PMEPA1Q969W9 287 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 MVB12AQ96EY5 273 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 DPYSL5Q9BPU6 564 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 GHITMQ9H3K2 345 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 LIN7BQ9HAP6 207 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 ATXN7L1Q9ULK2 861 aaPredicted RBP12.09□□□□□ -0.47
CCDC3-202ENST00000378839 CABIN1Q9Y6J0 2220 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 GPRIN2O60269 458 aa12.09□□□□□ -0.47
CCDC3-202ENST00000378839 NPIPB7O75200 414 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms