RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 RPS25P62851 125 aaKnown RBP12.96□□□□□ -0.33
HMGA1-203ENST00000374116 BIKQ13323 160 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 SERTAD2Q14140 314 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF267Q14586 743 aaPredicted RBP12.96□□□□□ -0.33
HMGA1-203ENST00000374116 KLHL12Q53G59 568 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 C22orf42Q6IC83 251 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 CD200R1LQ6Q8B3 271 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 NPSR1Q6W5P4 371 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 CDH24Q86UP0 819 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 LHFPL3Q86UP9 236 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 SIRT6Q8N6T7 355 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 OR4F15Q8NGB8 312 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 THAP4Q8WY91 577 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 AP3S1Q92572 193 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 TMEM203Q969S6 136 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 UPRTQ96BW1 309 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 THOC3Q96J01 351 aaKnown RBP12.96□□□□□ -0.33
HMGA1-203ENST00000374116 IMMP1LQ96LU5 166 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 TRIM2Q9C040 744 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 PPP1R3EQ9H7J1 279 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.96□□□□□ -0.33
HMGA1-203ENST00000374116 C20orf141Q9NUB4 165 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 PLEKHB1Q9UF11 243 aaPredicted RBP12.96□□□□□ -0.33
HMGA1-203ENST00000374116 ING4Q9UNL4 249 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 ERVK-19Q9WJR5 959 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 DTX4Q9Y2E6 619 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 KLF2Q9Y5W3 355 aaPredicted RBP12.96□□□□□ -0.33
HMGA1-203ENST00000374116 TNRC6AQ8NDV7 1962 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 A0A0B4J2E0 115 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 A0A1B0GX12 115 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 TRDV1A0A1B0GX56 115 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 AKAP8O43823 692 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 IFNA7P01567 189 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CLPSP04118 112 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CT45A8P0DMV1 189 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CT45A9P0DMV2 189 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 GAAP10253 952 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 RBM34P42696 430 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 FXYD6P3P58550 94 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 PPP3R1P63098 170 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 ELAVL1Q15717 326 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CRTC2Q53ET0 693 aaPredicted RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CT45A2Q5DJT8 189 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 BICRALQ6AI39 1079 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SMARCD3Q6STE5 483 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 C16orf47Q6ZP98 133 aaPredicted RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 MEPCEQ7L2J0 689 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF615Q8N8J6 731 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 NFAM1Q8NET5 270 aaPredicted RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 BBS1Q8NFJ9 593 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 OR4N2Q8NGD1 307 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SLC2A12Q8TD20 617 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CNOT9Q92600 299 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 DIRAS2Q96HU8 199 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 RADILQ96JH8 1075 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF649Q9BS31 505 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 FAM117AQ9C073 453 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 GLS2Q9UI32 602 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 KMT2BQ9UMN6 2715 aaPredicted RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CACNA1GO43497 2377 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 LINC00854A0A1B0GVQ3 168 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 A0A1W2PQL4 384 aaPredicted RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 J3QRE1 110 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 LYRM1O43325 122 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 PRAMEF2O60811 474 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 DDAH2O95865 285 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 HPP00738 406 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 NAT2P11245 290 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 PTNP21246 168 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 EVI2BP34910 448 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 PSMD4P55036 377 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SLC26A5P58743 744 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF141Q15928 474 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 TBR1Q16650 682 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 PYDC2Q56P42 97 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 TRIQKQ629K1 86 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 B3GNTL1Q67FW5 361 aaPredicted RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 NIPAL3Q6P499 406 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 PLBD1Q6P4A8 553 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 LINC00518Q8N0U6 118 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SLC43A2Q8N370 569 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 CLEC1AQ8NC01 280 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 APCDD1LQ8NCL9 501 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 C19orf18Q8NEA5 215 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 HGDQ93099 445 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SENP5Q96HI0 755 aaPredicted RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SECISBP2Q96T21 854 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SPENQ96T58 3664 aaKnown RBP12.95□□□□□ -0.34
HMGA1-203ENST00000374116 G6PC3Q9BUM1 346 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 NUDT9Q9BW91 350 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 PIEZO2Q9H5I5 2752 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 BAIAP2Q9UQB8 552 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 SIGLEC7Q9Y286 467 aa12.95□□□□□ -0.34
HMGA1-203ENST00000374116 C7orf66A4D0T2 115 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 PTP4A3O75365 173 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 F10P00742 488 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 SAGP10523 405 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 FUT1P19526 365 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 PAICSP22234 425 aaKnown RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 CD79BP40259 229 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms