RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ENTPD1P49961 510 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 GPR85P60893 370 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 TUBA1BP68363 451 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 FABP5Q01469 135 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 TLE3Q04726 772 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 TMEM176BQ3YBM2 270 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-202ENST00000372405 CD200R1LQ6Q8B3 271 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 GDPGP1Q6ZNW5 385 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 TUBA1AQ71U36 451 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 ASCL5Q7RTU5 278 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 ADCK1Q86TW2 530 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 TIGD4Q8IY51 512 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 C4orf36Q96KX1 117 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 OR5B2Q96R09 309 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 FANCFQ9NPI8 374 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 SACM1LQ9NTJ5 587 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 TXNL4BQ9NX01 149 aaKnown RBP12.37□□□□□ -0.43
PTPRF-202ENST00000372405 VSX1Q9NZR4 365 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-202ENST00000372405 MOKQ9UQ07 419 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 B3GALT5Q9Y2C3 310 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 NOX1Q9Y5S8 564 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 OR2M5A3KFT3 312 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 PINLYPA6NC86 204 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 CBR3O75828 277 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 NEURL1O76050 574 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 RENP00797 406 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 RFPL3SP0C7P2 107 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 PSKH1P11801 424 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 CEACAM1P13688 526 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 IFNGR1P15260 489 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 GTF2E2P29084 291 aaKnown RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 RBMS1P29558 406 aaKnown RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 BDH1Q02338 343 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 SRSF6Q13247 344 aaKnown RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 DGUOKQ16854 277 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 SPINK14Q6IE38 97 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 VASH1Q7L8A9 365 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 KBTBD8Q8NFY9 601 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 OR2T4Q8NH00 348 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 SLC25A43Q8WUT9 341 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 ASB10Q8WXI3 467 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 TXNDC15Q96J42 360 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 KIAA1549Q9HCM3 1950 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 A0A1W2PNV4 684 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 A0A1W2PRG6 482 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 TVP23AA6NH52 213 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF670-ZNF695F2Z2N8 137 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 J3QLW9 94 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 XKRYO14609 159 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 MT-ND5P03915 603 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF19P17023 458 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 ITGA3P26006 1051 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 OC90Q02509 493 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 POU3F1Q03052 451 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 AIMP2Q13155 320 aaKnown RBP12.36□□□□□ -0.43
PTPRF-202ENST00000372405 INSL4Q14641 139 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 TP53I3Q53FA7 332 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 RPTNQ6XPR3 784 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 GPALPP1Q8IXQ4 340 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 IP6K3Q96PC2 410 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 SIGLEC12Q96PQ1 595 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 SNX18Q96RF0 628 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 CDADC1Q9BWV3 514 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 RERGLQ9H628 205 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 MED29Q9NX70 200 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 LRFN1Q9P244 771 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 DKKL1Q9UK85 242 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 SSR3Q9UNL2 185 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 B9D1Q9UPM9 204 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 KLHDC2Q9Y2U9 406 aa12.36□□□□□ -0.43
PTPRF-202ENST00000372405 LOC400499M0QZD8 3231 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 IGLV1-36A0A0B4J1U3 117 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 SLC22A23A1A5C7 686 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 METTL15A6NJ78 407 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 NPIPB13A6NJU9 1138 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 NPIPB4C9JG80 1138 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 DVL2O14641 736 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 RAMP1O60894 148 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 CTLA4P16410 223 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 RPS19P39019 145 aaKnown RBP12.35□□□□□ -0.43
PTPRF-202ENST00000372405 OPRL1P41146 370 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 NOVA1P51513 510 aaKnown RBP12.35□□□□□ -0.43
PTPRF-202ENST00000372405 BMXP51813 675 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 B3GALT5-AS1P59052 145 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 HSF1Q00613 529 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 ETFDHQ16134 617 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 MOGQ16653 247 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 CDONQ4KMG0 1287 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 RAET1LQ5VY80 246 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 C22orf42Q6IC83 251 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 TUBA3EQ6PEY2 450 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 PXKQ7Z7A4 578 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 VASH2Q86V25 355 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 SYT14Q8NB59 555 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 MIB2Q96AX9 1013 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 TMED9Q9BVK6 235 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 IRF2BPLQ9H1B7 796 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 TSPAN10Q9H1Z9 355 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-202ENST00000372405 WDR76Q9H967 626 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 DLL3Q9NYJ7 618 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms