RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 KCNAB3O43448 404 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CELF2O95319 508 aaKnown RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CDKN1CP49918 316 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SLC22A6Q4U2R8 563 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 TMEM225Q6GV28 225 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SPATC1Q76KD6 591 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 LILRA2Q8N149 483 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 LEUTXA8MZ59 168 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 OR5H8P0DN80 308 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 UGCGQ16739 394 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 MEX3BQ6ZN04 569 aaKnown RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ABHD12BQ7Z5M8 362 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 EXD3Q8N9H8 876 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 PDLIM5Q96HC4 596 aaKnown RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 GPR88Q9GZN0 384 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 APOBEC3GQ9HC16 384 aaKnown RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SLC35A1P78382 337 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 FAM3DQ96BQ1 224 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SEH1LQ96EE3 360 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SVILO95425 2214 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 IGLV3-22A0A075B6J6 115 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 F2P00734 622 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 LIMS3P0CW19 117 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 LIMS4P0CW20 117 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ARAFP10398 606 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF25P17030 456 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 COX5AP20674 150 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF85Q03923 595 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 GLDNQ6ZMI3 551 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 LINC00469Q8N7U9 141 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ZC3HAV1LQ96H79 300 aaKnown RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 METTL7AQ9H8H3 244 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 DNAJB11Q9UBS4 358 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 OR52A1Q9UKL2 312 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 B3GALT5Q9Y2C3 310 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CCDC163A0A0D9SF12 145 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CMTM2Q8TAZ6 248 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 PBX4Q9BYU1 374 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CDRT15L2A8MXV6 281 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 PEX10O60683 326 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 HOXB5P09067 269 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 DUSP28Q4G0W2 176 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CATSPEREQ5SY80 951 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 GABRG1Q8N1C3 465 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 GLIS1Q8NBF1 620 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 BVESQ8NE79 360 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 C12orf42Q96LP6 360 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ST6GALNAC5Q9BVH7 336 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 JAM3Q9BX67 310 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CBLCQ9ULV8 474 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ZFP92A6NM28 416 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 CCR6P51684 374 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 FXYD4P59646 89 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 PLGLAQ15195 96 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SGCBQ16585 318 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SLC24A5Q71RS6 500 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 FAM210BQ96KR6 192 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 FZD8Q9H461 694 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 SLC23A1Q9UHI7 598 aa11.72□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF107Q9UII5 783 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-203ENST00000353578 LIPAP38571 399 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 RACK1P63244 317 aaKnown RBP11.71□□□□□ -0.53
COL6A3-203ENST00000353578 PJVKQ0ZLH3 352 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 LYG2Q86SG7 212 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 ASPGQ86U10 573 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 HSD17B11Q8NBQ5 300 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 KLF8O95600 359 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-203ENST00000353578 TBPL1P62380 186 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 Q6ZRG5 221 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 OR51A2Q8NGJ7 313 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 MRGPRX2Q96LB1 330 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 STBD1O95210 358 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 ERVS71-1P61550 626 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 DPPA3Q6W0C5 159 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 TECPR1Q7Z6L1 1165 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 USB1Q9BQ65 265 aaKnown RBP11.71□□□□□ -0.53
COL6A3-203ENST00000353578 MPDZO75970 2070 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 OR5H15A6NDH6 313 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 OR5H1A6NKK0 313 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 PCCBP05166 539 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 OR13C7P0DN81 318 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 HNRNPKP61978 463 aaKnown RBP eCLIP11.71□□□□□ -0.53
COL6A3-203ENST00000353578 HIST3H3Q16695 136 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 LSRQ86X29 649 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-203ENST00000353578 NUDCD2Q8WVJ2 157 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 HS3ST4Q9Y661 456 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 BTF3P20290 206 aaKnown RBP11.71□□□□□ -0.53
COL6A3-203ENST00000353578 RPL12P30050 165 aaKnown RBP11.71□□□□□ -0.53
COL6A3-203ENST00000353578 BEX5Q5H9J7 111 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 Q6ZN92 141 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 FAM26EQ8N5C1 309 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 OR5AP2Q8NGF4 316 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 OR52D1Q9H346 318 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 SRPK3Q9UPE1 567 aa11.71□□□□□ -0.53
COL6A3-203ENST00000353578 DUXBA0A1W2PPF3 345 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 CLEC3BP05452 202 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 EPHX1P07099 455 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 CLEC1AQ8NC01 280 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 DCDC2BA2VCK2 349 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 CLDN10P78369 228 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms