RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SIGLEC14Q08ET2 396 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 SLC10A1Q14973 349 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 PXKQ7Z7A4 578 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 MAML2Q8IZL2 1156 aaPredicted RBP13.65□□□□□ -0.22
COL17A1-201ENST00000353479 OR2S2Q9NQN1 319 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 ARID1BQ8NFD5 2236 aaPredicted RBP13.65□□□□□ -0.22
COL17A1-201ENST00000353479 SLC33A1O00400 549 aaPredicted RBP13.65□□□□□ -0.23
COL17A1-201ENST00000353479 FKBP2P26885 142 aaKnown RBP13.65□□□□□ -0.23
COL17A1-201ENST00000353479 CLDN12P56749 244 aa13.65□□□□□ -0.23
COL17A1-201ENST00000353479 SCGB1C1Q8TD33 95 aa13.65□□□□□ -0.23
COL17A1-201ENST00000353479 METTL9Q9H1A3 318 aa13.65□□□□□ -0.23
COL17A1-201ENST00000353479 ASB4Q9Y574 426 aa13.65□□□□□ -0.23
COL17A1-201ENST00000353479 M0R233 179 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 DNAJB6O75190 326 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 HOXB3P14651 431 aaPredicted RBP13.64□□□□□ -0.23
COL17A1-201ENST00000353479 DNASE1P24855 282 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 RBM39Q14498 530 aaKnown RBP13.64□□□□□ -0.23
COL17A1-201ENST00000353479 GSG1LQ6UXU4 331 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 TPRA1Q86W33 373 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 OR5D18Q8NGL1 313 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 NUDT9Q9BW91 350 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 DUSP13Q9UII6 198 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 STMND1H3BQB6 276 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 CD40LGP29965 261 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 PRSS41Q7RTY9 318 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 STEAP2Q8NFT2 490 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 CACNG2Q9Y698 323 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 SELENBP1Q13228 472 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 PLK5Q496M5 336 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 CCDC71LQ8N9Z2 235 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 OR4N2Q8NGD1 307 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 ZC3HAV1LQ96H79 300 aaKnown RBP13.64□□□□□ -0.23
COL17A1-201ENST00000353479 TREM1Q9NP99 234 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 ZNF226Q9NYT6 803 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 NUP50Q9UKX7 468 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 DOCK3Q8IZD9 2030 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 DVL2O14641 736 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 RAE1P78406 368 aaKnown RBP13.64□□□□□ -0.23
COL17A1-201ENST00000353479 SLC35D3Q5M8T2 416 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 CMTM1Q8IZ96 169 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 AMER3Q8N944 861 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 TXNDC15Q96J42 360 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 LHX6Q9UPM6 363 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 ATG2BQ96BY7 2078 aa13.64□□□□□ -0.23
COL17A1-201ENST00000353479 ZC3H12DA2A288 527 aaKnown RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 F5H0A9 414 aaPredicted RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 ACTL6BO94805 426 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 SCG5P05408 212 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 EDN3P14138 238 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 TRA2AQ13595 282 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 Q499Y3 187 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 CCDC58Q4VC31 144 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 GLB1L2Q8IW92 636 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 ABHD4Q8TB40 342 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 BORCS7-ASMTA0A0B4J1R7 106 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 RP2O75695 350 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 TP53P04637 393 aaPredicted RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 AKAIN1P0CW23 69 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 HLA-DMAP28067 261 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 BDKRB2P30411 391 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 EXOSC6Q5RKV6 272 aaKnown RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 CLEC2DQ9UHP7 191 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 ZNFX1Q9P2E3 1918 aaKnown RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 ALKBH1Q13686 389 aaKnown RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 COL13A1Q5TAT6 717 aaPredicted RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 GJC3Q8NFK1 279 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 BRIX1Q8TDN6 353 aaKnown RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 OR14A2Q96R54 314 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 NOX4Q9NPH5 578 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 A0A0A6YYH2 397 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 A6NHS1 94 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 A6NJ64 397 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 FXYD1O00168 92 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 UPK1BO75841 260 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 SNRPBP14678 240 aaKnown RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 PRKACBP22694 351 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 SHC1P29353 583 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 FCRL6Q6DN72 434 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 ST8SIA1Q92185 356 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 C7orf34Q96L11 122 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 KCNE3Q9Y6H6 103 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 SLC2A1P11166 492 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 S100A1P23297 94 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 SNRPGP62308 76 aaKnown RBP13.63□□□□□ -0.23
COL17A1-201ENST00000353479 IL10RAQ13651 578 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 ACKR1Q16570 336 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 SLC16A9Q7RTY1 509 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 ABI3BPQ7Z7G0 1075 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 OR2A5Q96R48 311 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 NRTNQ99748 197 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 RAB9BQ9NP90 201 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 NRIP3Q9NQ35 241 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 MED16Q9Y2X0 877 aa13.63□□□□□ -0.23
COL17A1-201ENST00000353479 GOSR2O14653 212 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 HRO43593 1189 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 OR7C1O76099 320 aaPredicted RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 SLC2A10O95528 541 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 CBX7O95931 251 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 TEKQ02763 1124 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 ZNF620Q6ZNG0 422 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms