RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC35F4A4IF30 521 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 SLC22A20A6NK97 555 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CRYABP02511 175 aaKnown RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 ATP6V1B1P15313 513 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 MYF6P23409 242 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 FPR3P25089 353 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 UQCRFS1P47985 274 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 SELENOPP49908 381 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CLDN18P56856 261 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 IGFL3Q6UXB1 125 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 SLC35D2Q76EJ3 337 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 JAZF1Q86VZ6 243 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 LRR1Q96L50 414 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 TAS2R5Q9NYW4 299 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 MCTS1Q9ULC4 181 aaKnown RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 MED13LQ71F56 2210 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CCDC168Q8NDH2 2452 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 A0A087WZY1 265 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 ZNF726A6NNF4 738 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 SMAD9O15198 467 aaKnown RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 SLC19A2O60779 497 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 RCBTB2O95199 551 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 BGLAPP02818 100 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 HPNP05981 417 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CDAP32320 146 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 HCCSP53701 268 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CDH15P55291 814 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 RPS3AP61247 264 aaKnown RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 FAHD1Q6P587 224 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 ESPNLQ6ZVH7 1005 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 ZMYND19Q96E35 227 aaPredicted RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 DOK1Q99704 481 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 RBM24Q9BX46 236 aaKnown RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 C1QTNF6Q9BXI9 259 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CHST11Q9NPF2 352 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 INIPQ9NRY2 104 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 REV1Q9UBZ9 1251 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 TMEM5Q9Y2B1 443 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CDH10Q9Y6N8 788 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 ASH1LQ9NR48 2969 aaKnown RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 USP9YO00507 2555 aaPredicted RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 IGLV3-32A0A0A0MS00 114 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 A0A1W2PRG6 482 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 CSNK2A1P68400 391 aaPredicted RBP8.22□□□□□ -1.09
USP4-202ENST00000351842 PMPCAQ10713 525 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 FOXF2Q12947 444 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 MEP1BQ16820 701 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 VASNQ6EMK4 673 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 PCSK4Q6UW60 755 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 SARAFQ96BY9 339 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 OR2B2Q9GZK3 357 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 ZDHHC11Q9H8X9 412 aa8.22□□□□□ -1.09
USP4-202ENST00000351842 USF3Q68DE3 2245 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 A0A096LPE4 126 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 A0A1W2PPZ6 126 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 GJE1A6NN92 205 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 RIIAD1A6NNX1 92 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 PLPP3O14495 311 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 MAGEB4O15481 346 aaPredicted RBP8.21□□□□□ -1.09
USP4-202ENST00000351842 SLC16A7O60669 478 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 MPZL1O95297 269 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 PATE4P0C8F1 98 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 SLC6A6P31641 620 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 CAPGP40121 348 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 CTBP2P56545 445 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 CDC42P60953 191 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 SLC35A1P78382 337 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 FOXK2Q01167 660 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 TLE1Q04724 770 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 CTU2Q2VPK5 515 aaKnown RBP8.21□□□□□ -1.09
USP4-202ENST00000351842 USP51Q70EK9 711 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 ERI1Q8IV48 349 aaKnown RBP8.21□□□□□ -1.09
USP4-202ENST00000351842 RNF113BQ8IZP6 322 aaKnown RBP8.21□□□□□ -1.09
USP4-202ENST00000351842 C8orf59Q8N0T1 100 aaPredicted RBP8.21□□□□□ -1.09
USP4-202ENST00000351842 LRRC18Q8N456 261 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 ZNF511Q8NB15 262 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 PROKR2Q8NFJ6 384 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 RNF138Q8WVD3 245 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 MIB2Q96AX9 1013 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 FUZQ9BT04 418 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 TMEM43Q9BTV4 400 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 ZNF426Q9BUY5 554 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 TIGARQ9NQ88 270 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 H2AFY2Q9P0M6 372 aaPredicted RBP8.21□□□□□ -1.09
USP4-202ENST00000351842 POLR1DQ9Y2S0 133 aa8.21□□□□□ -1.09
USP4-202ENST00000351842 GCN1Q92616 2671 aaKnown RBP8.21□□□□□ -1.1
USP4-202ENST00000351842 A0A1W2PPL8 197 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 DCTN6O00399 190 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 PRRG2O14669 202 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 RBM34P42696 430 aaKnown RBP8.21□□□□□ -1.1
USP4-202ENST00000351842 PSMD7P51665 324 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 SMSP52788 366 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 KRR1Q13601 381 aaKnown RBP8.21□□□□□ -1.1
USP4-202ENST00000351842 RFX4Q33E94 735 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 THOC7Q6I9Y2 204 aaKnown RBP8.21□□□□□ -1.1
USP4-202ENST00000351842 LINC00114Q6XXX2 140 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 AHSA2Q719I0 299 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 SLC25A43Q8WUT9 341 aaPredicted RBP8.21□□□□□ -1.1
USP4-202ENST00000351842 SNRNP27Q8WVK2 155 aaKnown RBP8.21□□□□□ -1.1
USP4-202ENST00000351842 ZNF837Q96EG3 531 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms