RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TNFRSF4P43489 277 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 EMP3P54852 163 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 ZNF74Q16587 644 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 MPEG1Q2M385 716 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 ACOT7LQ6ZUV0 252 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 CDH26Q8IXH8 852 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 C1orf87Q8N0U7 546 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 FAM26EQ8N5C1 309 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 DVL3Q92997 716 aaPredicted RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 DDIT4LQ96D03 193 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 OR1F2PQ96R84 312 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 KATNB1Q9BVA0 655 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 SLIRPQ9GZT3 109 aaKnown RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 GCM1Q9NP62 436 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 A4GALTQ9NPC4 353 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 ISYNA1Q9NPH2 558 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 FTSJ1Q9UET6 329 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 TRAPPC4Q9Y296 219 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 C17orf105B2RV13 164 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 M0QYG6 137 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 LGALS8O00214 317 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 SYT5O00445 386 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 GABRR1P24046 479 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 PXNP49023 591 aaPredicted RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 DGCR2P98153 550 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ZNF266Q14584 549 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 DEFB133Q30KQ1 61 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ADAMTSL4Q6UY14 1074 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ABHD12BQ7Z5M8 362 aaPredicted RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 TEX19Q8NA77 164 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 IL17RCQ8NAC3 791 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 OR13C9Q8NGT0 318 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 SPTSSAQ969W0 71 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 C20orf24Q9BUV8 137 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 HDAC8Q9BY41 377 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 PDFQ9HBH1 243 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 STARD5Q9NSY2 213 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 MOKQ9UQ07 419 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 TMEM72A0PK05 275 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 OR2C1O95371 312 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 FURINP09958 794 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 SRMP19623 302 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 KIR2DL3P43628 341 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 DLX2Q07687 328 aaPredicted RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 IAH1Q2TAA2 248 aaPredicted RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 COX20Q5RI15 118 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 FAM69BQ5VUD6 431 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 OVCH1Q7RTY7 1134 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ZNF611Q8N823 705 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 OR56B1Q8NGI3 324 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 OR51S1Q8NGJ8 323 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 UCN3Q969E3 161 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 HINT2Q9BX68 163 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ANKRD19PQ9H560 264 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 TAF9BQ9HBM6 251 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ZNF160Q9HCG1 818 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 EXOSC3Q9NQT5 275 aaKnown RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 KCMF1Q9P0J7 381 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 EXO1Q9UQ84 846 aaKnown RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 TRAV20A0A0B4J274 112 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 DFFBO76075 338 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 HBQ1P09105 142 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 XCR1P46094 333 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 MRPL49Q13405 166 aaKnown RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 CRMP1Q14194 572 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 KLHDC8BQ8IXV7 354 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 PLPP6Q8IY26 295 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 HSD17B11Q8NBQ5 300 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 OR52I2Q8NH67 350 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 SLC41A2Q96JW4 573 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 OPALINQ96PE5 141 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 POFUT1Q9H488 388 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 THAP10Q9P2Z0 257 aaPredicted RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 RGS11O94810 467 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 GPR75O95800 540 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 TACR3P29371 465 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 FOXK2Q01167 660 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 CCNJQ5T5M9 372 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ANKRD34AQ69YU3 496 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 TMEM88Q6PEY1 159 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 DPY19L4Q7Z388 723 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 RELL2Q8NC24 303 aaPredicted RBP10.63□□□□□ -0.71
VPS39-201ENST00000318006 VN1R2Q8NFZ6 395 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 DIO2Q92813 273 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 BORCS7Q96B45 105 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 NEURL3Q96EH8 262 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 DOK1Q99704 481 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 ALG12Q9BV10 488 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS39-201ENST00000318006 SPHK1Q9NYA1 384 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 URGCP-MRPS24S4R325 110 aa10.63□□□□□ -0.71
VPS39-201ENST00000318006 MT-ND4LP03901 98 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 OR13C7P0DN81 318 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 CPMP14384 443 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 CPN1P15169 458 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 ZNF43P17038 809 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 MMP11P24347 488 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 YPEL5P62699 121 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 EXOSC6Q5RKV6 272 aaKnown RBP10.62□□□□□ -0.71
VPS39-201ENST00000318006 Q6ZTK2 550 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms