RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 BARHL1Q9BZE3 327 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 MIXL1Q9H2W2 232 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 PLEKHJ1Q9NW61 149 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 C19orf25Q9UFG5 118 aaPredicted RBP17.78■□□□□ 0.44
USP48-201ENST00000308271 CCL26Q9Y258 94 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 RHBDD3Q9Y3P4 386 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 BLACEA4D250 179 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 TSTD3H0UI37 97 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 IMPA2O14732 288 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 TPPPO94811 219 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 FBLP22087 321 aaKnown RBP17.78■□□□□ 0.44
USP48-201ENST00000308271 UEVLDQ8IX04 471 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 SIRT6Q8N6T7 355 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 RASD2Q96D21 266 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 ADOQ96SZ5 270 aa17.78■□□□□ 0.44
USP48-201ENST00000308271 STK17BO94768 372 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 NME2P22392 152 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 RAB38P57729 211 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 HTRA3P83110 453 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 NSDHLQ15738 373 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 MEP1BQ16820 701 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 SLC22A6Q4U2R8 563 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 PAPD4Q6PIY7 484 aaKnown RBP17.77■□□□□ 0.44
USP48-201ENST00000308271 GLDNQ6ZMI3 551 aaPredicted RBP17.77■□□□□ 0.44
USP48-201ENST00000308271 OR10Z1Q8NGY1 313 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 FAM86C1Q9NVL1 165 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 EHFQ9NZC4 300 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 C19orf53Q9UNZ5 99 aaPredicted RBP17.77■□□□□ 0.44
USP48-201ENST00000308271 OR5H14A6NHG9 310 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 E9PI62 339 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 NPIPA2E9PIF3 369 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 NPIPA3F8WFD2 350 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 ST3GAL2Q16842 350 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 TMEM52BQ4KMG9 183 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 CCDC71Q8IV32 467 aaPredicted RBP17.77■□□□□ 0.44
USP48-201ENST00000308271 CMIPQ8IY22 773 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 ANKRD53Q8N9V6 530 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 MIB2Q96AX9 1013 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 FOXN4Q96NZ1 517 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 CCL5P13501 91 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 CNR1P21554 472 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 ABHD12BQ7Z5M8 362 aaPredicted RBP17.77■□□□□ 0.44
USP48-201ENST00000308271 OR8D4Q8NGM9 314 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 TGM7Q96PF1 710 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 CLDND1Q9NY35 253 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 LRFN1Q9P244 771 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 NDRG3Q9UGV2 375 aa17.77■□□□□ 0.44
USP48-201ENST00000308271 HNRNPA2B1P22626 353 aaKnown RBP17.77■□□□□ 0.43
USP48-201ENST00000308271 DCTDP32321 178 aa17.77■□□□□ 0.43
USP48-201ENST00000308271 FXYD4P59646 89 aa17.77■□□□□ 0.43
USP48-201ENST00000308271 GLYR1Q49A26 553 aaPredicted RBP17.77■□□□□ 0.43
USP48-201ENST00000308271 FAAP20Q6NZ36 180 aa17.77■□□□□ 0.43
USP48-201ENST00000308271 MDGA2Q7Z553 956 aa17.77■□□□□ 0.43
USP48-201ENST00000308271 NKAIN3Q8N8D7 197 aa17.77■□□□□ 0.43
USP48-201ENST00000308271 ST8SIA2Q92186 375 aa17.77■□□□□ 0.43
USP48-201ENST00000308271 C11orf49Q9H6J7 331 aa17.77■□□□□ 0.43
USP48-201ENST00000308271 MAP1BP46821 2468 aaKnown RBP17.77■□□□□ 0.43
USP48-201ENST00000308271 TBX19O60806 448 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 PVRP15151 417 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 HIST1H1CP16403 213 aaKnown RBP17.76■□□□□ 0.43
USP48-201ENST00000308271 IFITM2Q01629 132 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 RTL10Q7L3V2 364 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 TSTD1Q8NFU3 115 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 GAREM1Q9H706 876 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 RAB22AQ9UL26 194 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 B3GALT1Q9Y5Z6 326 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 CACNA1CQ13936 2221 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 PRSS38A1L453 326 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 NPIPB8E9PQR5 432 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 ZNF16P17020 682 aaPredicted RBP17.76■□□□□ 0.43
USP48-201ENST00000308271 BPHLQ86WA6 291 aaPredicted RBP17.76■□□□□ 0.43
USP48-201ENST00000308271 GABRG1Q8N1C3 465 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 OR4Q3Q8NH05 313 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 SELENOIQ9C0D9 397 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 STARD5Q9NSY2 213 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 SDK1Q7Z5N4 2213 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 KIAA1217Q5T5P2 1943 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 TP53I11O14683 189 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 ITGBL1O95965 494 aaPredicted RBP17.76■□□□□ 0.43
USP48-201ENST00000308271 MLC1Q15049 377 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 EBPQ15125 230 aaKnown RBP17.76■□□□□ 0.43
USP48-201ENST00000308271 OR10K2Q6IF99 312 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 TECPR1Q7Z6L1 1165 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 TMEM156Q8N614 296 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 FRMD1Q8N878 549 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 OR56B1Q8NGI3 324 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 EID2BQ96D98 161 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 DZANK1Q9NVP4 752 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 KLK11Q9UBX7 282 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 PRELID3BQ9Y3B1 194 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 HEXBP07686 556 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 CEBPBP17676 345 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 ZFP36L2P47974 494 aaKnown RBP17.76■□□□□ 0.43
USP48-201ENST00000308271 SGCBQ16585 318 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 GSG1Q2KHT4 349 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 LINC00303Q3SY05 128 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 GPR157Q5UAW9 335 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 WDR88Q6ZMY6 472 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 C9orf62Q8N4C0 152 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 PLPP7Q8NBV4 271 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms