RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TLR9Q9NR96 1032 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CUTCQ9NTM9 273 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 DECR2Q9NUI1 292 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 RNF19AQ9NV58 838 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CXXC1Q9P0U4 656 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 RBMX2Q9Y388 322 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM265A0A087WTH1 108 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TCRBV7S3A2A0A539 114 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FAM74A7A6NL05 159 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF587BE7ETH6 402 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MBPP02686 304 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MTHFD2P13995 350 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FCN2Q15485 313 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM107Q6UX40 140 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FAM58AQ8N1B3 248 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SLC30A7Q8NEW0 376 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MR1Q95460 341 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 APH1AQ96BI3 265 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 S1PR3Q99500 378 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SUCNR1Q9BXA5 334 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FBRSL1Q9HCM7 1045 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OBP2AQ9NY56 170 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MYO16Q9Y6X6 1858 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SMAD9O15198 467 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 BCKDHBP21953 392 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SIRPAP78324 504 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF791Q3KP31 576 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MIDNQ504T8 468 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MRPL21Q7Z2W9 205 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 GCNT2Q8N0V5 402 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TCTEX1D1Q8N7M0 179 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FADS6Q8N9I5 356 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 GLIS1Q8NBF1 620 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FAM156AQ8NDB6 213 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ADPRHL1Q8NDY3 354 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR8K3Q8NH51 312 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 NPRL2Q8WTW4 380 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MRPL24Q96A35 216 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM18Q96B42 140 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SLC25A44Q96H78 314 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 LYRM4Q9HD34 91 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 DOT1LQ8TEK3 1739 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 A0A1W2PQH9 124 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 LRRC30A6NM36 301 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FIGNL2A6NMB9 653 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SOX1O00570 391 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 LDB2O43679 373 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ENSAO43768 121 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TOXO94900 526 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CNIH1O95406 144 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CXCL14O95715 111 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 H2BFMP0C1H6 154 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MMP9P14780 707 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PYCR1P32322 319 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 BAXQ07812 192 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PHYHD1Q5SRE7 291 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SAXO2Q658L1 398 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SLC35F2Q8IXU6 374 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 WDTC1Q8N5D0 677 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR51A2Q8NGJ7 313 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FIBINQ8TAL6 211 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ZBTB8AQ96BR9 441 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MRAP2Q96G30 205 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 C11orf54Q9H0W9 315 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 LOC730098B7Z3J9 87 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 GABRPO00591 440 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PHOX2AO14813 284 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 BCHEP06276 602 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 HLA-DOBP13765 273 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CD1CP29017 333 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MADCAM1Q13477 382 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TOR2AQ5JU69 321 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CTSL3PQ5NE16 218 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 RAET1LQ5VY80 246 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 GDPD3Q7L5L3 318 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MDGA2Q7Z553 956 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 BAP18Q8IXM2 172 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 RELL2Q8NC24 303 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PLPP5Q8NEB5 264 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR52P1PQ8NH57 321 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR51Q1Q8NH59 317 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SMIM19Q96E16 107 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR2A14Q96R47 310 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FAM117AQ9C073 453 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ACTR3CQ9C0K3 210 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ALPK2Q86TB3 2170 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 LOC100289279A0A1B0GTE1 492 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF815PA8K554 130 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PAPLNO95428 1278 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PNPP00491 289 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OPN1MWP04001 364 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 P04436 131 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PROS1P07225 676 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OPN1MW2P0DN77 364 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OPN1MW3P0DN78 364 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 NPY1RP25929 384 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 KIR2DL3P43628 341 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PRLHRP49683 370 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SLC25A1P53007 311 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SEC13P55735 322 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms