RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 AMELYQ99218 206 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 NUDT15Q9NV35 164 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 AFF3P51826 1226 aaKnown RBP18.17■□□□□ 0.5
VPS53-201ENST00000291074 ODF4Q2M2E3 257 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 TMPRSS9Q7Z410 1059 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.17■□□□□ 0.5
VPS53-201ENST00000291074 TCTE3Q8IZS6 198 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 TOMM5Q8N4H5 51 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 PTDSS2Q9BVG9 487 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 NDEL1Q9GZM8 345 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 SLC22A11Q9NSA0 550 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 LAMP5Q9UJQ1 280 aa18.17■□□□□ 0.5
VPS53-201ENST00000291074 ATXN7L1Q9ULK2 861 aaPredicted RBP18.17■□□□□ 0.5
VPS53-201ENST00000291074 MFRPQ9BY79 579 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 C12orf10Q9HB07 376 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 CACNA1EQ15878 2313 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 TRAV36DV7A0A075B6V5 113 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 IFITM5A6NNB3 132 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 TO15178 435 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 CDC40O60508 579 aaKnown RBP eCLIP18.16■□□□□ 0.5
VPS53-201ENST00000291074 SLC25A12O75746 678 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 RENP00797 406 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 GP1BBP13224 206 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 MMP15P51511 669 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 ALKBH1Q13686 389 aaKnown RBP18.16■□□□□ 0.5
VPS53-201ENST00000291074 SLC6A19Q695T7 634 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 OR5M10Q6IEU7 315 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 FAM199XQ6PEV8 388 aaPredicted RBP18.16■□□□□ 0.5
VPS53-201ENST00000291074 SERPINA12Q8IW75 414 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 ASCC1Q8N9N2 400 aaKnown RBP18.16■□□□□ 0.5
VPS53-201ENST00000291074 OR10AC1Q8NH08 325 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 THEM6Q8WUY1 208 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 OR11A1Q9GZK7 315 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 A0A0A6YYJ9 748 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 PGCP20142 388 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 STARD6P59095 220 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 EMC4Q5J8M3 183 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 UBE2NLQ5JXB2 153 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 EEF1A1P5Q5VTE0 462 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 COX15Q7KZN9 410 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 OR5AK2Q8NH90 309 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 SLC25A38Q96DW6 304 aa18.16■□□□□ 0.5
VPS53-201ENST00000291074 CPAMD8Q8IZJ3 1885 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 VPS13AQ96RL7 3174 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 C2orf72A6NCS6 295 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 SUSD5O60279 629 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 TACSTD2P09758 323 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 ANKRD34CP0C6C1 535 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 CCR6P51684 374 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 ZNF441Q8N8Z8 693 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 DNAAF1Q8NEP3 725 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 THAP3Q8WTV1 239 aaPredicted RBP18.15■□□□□ 0.5
VPS53-201ENST00000291074 DNASE2BQ8WZ79 361 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 AKAP1Q92667 903 aaKnown RBP eCLIP18.15■□□□□ 0.5
VPS53-201ENST00000291074 ATOH1Q92858 354 aaPredicted RBP18.15■□□□□ 0.5
VPS53-201ENST00000291074 CCDC74AQ96AQ1 378 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 KCNG2Q9UJ96 466 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 CAMK2AQ9UQM7 478 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 TMED7-TICAM2A0A0A6YYA0 188 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 A0A1W2PQD3 144 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 AIPO00170 330 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 EIF4E2O60573 245 aaKnown RBP18.15■□□□□ 0.5
VPS53-201ENST00000291074 MT-ND4P03905 459 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 GIFP27352 417 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 GPLD1P80108 840 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 FCRLAQ7L513 359 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 CARFQ8N187 725 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 SPEM1Q8N4L4 309 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 DUSP19Q8WTR2 217 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 LIN7BQ9HAP6 207 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 MRPL15Q9P015 296 aaKnown RBP18.15■□□□□ 0.5
VPS53-201ENST00000291074 TMED7Q9Y3B3 224 aa18.15■□□□□ 0.5
VPS53-201ENST00000291074 FREM3P0C091 2139 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 TRIM3O75382 744 aaPredicted RBP18.14■□□□□ 0.49
VPS53-201ENST00000291074 ADRA2CP18825 462 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 ALOX5APP20292 161 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 DPP4P27487 766 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 PNLIPRP2P54317 469 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 PITPNAQ00169 270 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 CBFBQ13951 182 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 GPR139Q6DWJ6 353 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 OR51A4Q8NGJ6 313 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 METTL21AQ8WXB1 218 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 PHYHIPQ92561 330 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 INTS14Q96SY0 518 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 NPAS1Q99742 590 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 ULBP3Q9BZM4 244 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 DPAGT1Q9H3H5 408 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 SEMA5BQ9P283 1151 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 PI4KAP42356 2102 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 FADS1O60427 444 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 ZNF354AO60765 605 aaPredicted RBP18.14■□□□□ 0.49
VPS53-201ENST00000291074 ITGA10O75578 1167 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 CENPAP49450 140 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 BTG1P62324 171 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 SHBQ15464 509 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 ACKR1Q16570 336 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 Q499Y3 187 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 STAC2Q6ZMT1 411 aa18.14■□□□□ 0.49
VPS53-201ENST00000291074 SLC35D2Q76EJ3 337 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms