RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 C20orf196Q8IYI0 205 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 ZNF433Q8N7K0 673 aaPredicted RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 POMGNT2Q8NAT1 580 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 OR10G2Q8NGC3 310 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 OR6X1Q8NH79 312 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 GIPC3Q8TF64 312 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 ASB10Q8WXI3 467 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 LRTOMTQ8WZ04 291 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 GTPBP3Q969Y2 492 aaKnown RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 ZNF837Q96EG3 531 aaPredicted RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 ALKBH3Q96Q83 286 aaPredicted RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 CRIM1Q9NZV1 1036 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 ZNF346Q9UL40 294 aaKnown RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 GPR52Q9Y2T5 361 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 MAGED1Q9Y5V3 778 aaPredicted RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 TUBAL3A6NHL2 446 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 M0R3G1 203 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 AKAP8O43823 692 aaKnown RBP11.23□□□□□ -0.61
SS18-202ENST00000269138 E2F6O75461 281 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 KRT33AO76009 404 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 IGFBP1P08833 259 aaPredicted RBP11.23□□□□□ -0.61
SS18-202ENST00000269138 CDH2P19022 906 aaPredicted RBP11.23□□□□□ -0.61
SS18-202ENST00000269138 RPL4P36578 427 aaKnown RBP11.23□□□□□ -0.61
SS18-202ENST00000269138 PRPS1P60891 318 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 TSPAN31Q12999 210 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 ATP6AP1Q15904 470 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 ANKDD1AQ495B1 522 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 HMBOX1Q6NT76 420 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 GPR137CQ8N3F9 429 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 LINC00471Q8N535 108 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 KISS1RQ969F8 398 aaPredicted RBP11.23□□□□□ -0.61
SS18-202ENST00000269138 S100PBPQ96BU1 408 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 TSPAN32Q96QS1 320 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 FEVQ99581 238 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 KATNB1Q9BVA0 655 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 LINC00470Q9BZP3 86 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 ACTR6Q9GZN1 396 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 TXNIPQ9H3M7 391 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 GPR35Q9HC97 309 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 PDP1Q9P0J1 537 aaPredicted RBP11.23□□□□□ -0.61
SS18-202ENST00000269138 ADAM18Q9Y3Q7 739 aa11.23□□□□□ -0.61
SS18-202ENST00000269138 ERICH4A6NGS2 130 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 H3BNX3 289 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 HNRNPRO43390 633 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 ENTPD5O75356 428 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 DEAF1O75398 565 aaPredicted RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 TRMUO75648 421 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 RAD51DO75771 328 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 NDUFB2O95178 105 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 IGHMP01871 453 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 THBDP07204 575 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 CD14P08571 375 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 IL32P24001 234 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 MPGP29372 298 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 RPL27P61353 136 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 ROR2Q01974 943 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 SMARCD3Q6STE5 483 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 SYT14Q8NB59 555 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 OR6N1Q8NGY5 312 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 FANK1Q8TC84 345 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 HDAC2Q92769 488 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 TMEM54Q969K7 222 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 SLC25A44Q96H78 314 aaPredicted RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 ZC3HAV1LQ96H79 300 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 SAMD8Q96LT4 415 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 Q96M85 177 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 ADAD1Q96M93 576 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 NIPSNAP1Q9BPW8 284 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 HDHD5Q9BXW7 423 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 POLDIP3Q9BY77 421 aaKnown RBP11.22□□□□□ -0.61
SS18-202ENST00000269138 OR52D1Q9H346 318 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 EGLN3Q9H6Z9 239 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 TAS2R16Q9NYV7 291 aa11.22□□□□□ -0.61
SS18-202ENST00000269138 CIB4A0PJX0 185 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 SH3D21A4FU49 640 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 NPIPB13A6NJU9 1138 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 OR6C65A6NJZ3 312 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 NPIPB4C9JG80 1138 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 ZNF587BE7ETH6 402 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 PGA4P0DJD7 388 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 PGA3P0DJD8 388 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 ACADSP16219 412 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 FASP25445 335 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 ACVR1BP36896 505 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 CSNK1A1P48729 337 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 DAP3P51398 398 aaKnown RBP11.21□□□□□ -0.61
SS18-202ENST00000269138 ARF1P84077 181 aaKnown RBP11.21□□□□□ -0.61
SS18-202ENST00000269138 MYBPC1Q00872 1141 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 GK3PQ14409 553 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 GABRA6Q16445 453 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 CEACAM16Q2WEN9 425 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 RFX4Q33E94 735 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 ALKBH2Q6NS38 261 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 LRFN4Q6PJG9 635 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 ZNF620Q6ZNG0 422 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 FAM122BQ7Z309 247 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 ZNF295-AS1Q8N0V1 137 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 CLDN22Q8N7P3 220 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 STEAP2Q8NFT2 490 aa11.21□□□□□ -0.61
SS18-202ENST00000269138 ZNF519Q8TB69 540 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms