RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PRAMEF17Q5VTA0 474 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 GLT8D1Q68CQ7 371 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 JMJD6Q6NYC1 403 aaPredicted RBP13.12□□□□□ -0.31
SDC1-201ENST00000254351 NUDT18Q6ZVK8 323 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 KRT77Q7Z794 578 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 GALNT16Q8N428 558 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 ZNF676Q8N7Q3 588 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 OR2A1Q8NGT9 310 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 MYADMQ96S97 322 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 BCL2L14Q9BZR8 327 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 PRSS16Q9NQE7 514 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 INPP5EQ9NRR6 644 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 PRR13Q9NZ81 148 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 CALML5Q9NZT1 146 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 KLHDC2Q9Y2U9 406 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 FITM1A5D6W6 292 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 ITGA10O75578 1167 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 LATS1O95835 1130 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 IL5P05113 134 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 DCNP07585 359 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 GABRA3P34903 492 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 PPT1P50897 306 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 PGDP52209 483 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 SKP1P63208 163 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 TCEAL5Q5H9L2 206 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 EXOSC6Q5RKV6 272 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 GTPBP8Q8N3Z3 284 aaPredicted RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 GATSQ8NAP1 163 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 MIB2Q96AX9 1013 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 ADAD1Q96M93 576 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 INSM2Q96T92 566 aaPredicted RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 SLC19A3Q9BZV2 496 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 STEAP1Q9UHE8 339 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 DENND4CQ5VZ89 1909 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 MDC1Q14676 2089 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3EA0A087X179 549 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 TMEM82A0PJX8 343 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 ICOSLGO75144 302 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 GLSO94925 669 aaPredicted RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 ZNF888P0CJ79 500 aaPredicted RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 RPA2P15927 270 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 CALCRP30988 508 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 WASP42768 502 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 PRDX1Q06830 199 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 CCDC157Q569K6 752 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 C1orf53Q5VUE5 145 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 LIPNQ5VXI9 398 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 OLFML2AQ68BL7 652 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 STEAP1BQ6NZ63 245 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 LRRC69Q6ZNQ3 347 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 BIVMQ86UB2 503 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 JAM3Q9BX67 310 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 SELENOIQ9C0D9 397 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 DPEP2Q9H4A9 486 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 PLEKHA1Q9HB21 404 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 A0A1B0GWA3 101 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 ELOA3DA6NLF2 546 aaPredicted RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 SPINT1O43278 529 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 TGM5O43548 720 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 S100A6P06703 90 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 OR2T7P0C7T2 308 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 UBBP0CG47 229 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 UBCP0CG48 685 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 ACTA2P62736 377 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 RPS27AP62979 156 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 UBA52P62987 128 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 ACTG2P63267 376 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 EIF2B1Q14232 305 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 GAS6Q14393 721 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 ELOA3BQ3SY89 546 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 C3orf33Q6P1S2 294 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 POMZP3Q6PJE2 187 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 FOXRED2Q8IWF2 684 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 ELOA3Q8NG57 546 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 OR2T27Q8NH04 317 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 OR5AK2Q8NH90 309 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 TSEN15Q8WW01 171 aaKnown RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 ARRDC3Q96B67 414 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 MRGPRX3Q96LB0 322 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 TMEM27Q9HBJ8 222 aa13.11□□□□□ -0.31
SDC1-201ENST00000254351 ZNF629Q9UEG4 869 aaPredicted RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 KLF2Q9Y5W3 355 aaPredicted RBP13.11□□□□□ -0.31
SDC1-201ENST00000254351 A0A0A6YYC8 382 aaPredicted RBP13.1□□□□□ -0.31
SDC1-201ENST00000254351 I3L1I5 382 aaPredicted RBP13.1□□□□□ -0.31
SDC1-201ENST00000254351 AQP8O94778 261 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TYRP1P17643 537 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 CD34P28906 385 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 MNDAP41218 407 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 POU3F4P49335 361 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 EEF1A1P68104 462 aaKnown RBP13.1□□□□□ -0.31
SDC1-201ENST00000254351 IL10RAQ13651 578 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 NR0B2Q15466 257 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 DCST2Q5T1A1 773 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 MOB3CQ70IA8 216 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TEX19Q8NA77 164 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 OR4N2Q8NGD1 307 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 MOAP1Q96BY2 351 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TOX2Q96NM4 488 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 PELI2Q9HAT8 420 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 SPHK2Q9NRA0 654 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms